Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01437

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
1,580,535	+		MIT1002_01436	0.11	+0.1
1,580,545	+		MIT1002_01436	0.12	+0.6
1,580,553	-		MIT1002_01436	0.13	+0.5
1,580,641	+		MIT1002_01436	0.24	+1.8
1,580,641	+		MIT1002_01436	0.24	-1.1
1,580,750	-		MIT1002_01436	0.38	+2.4
1,580,972	-		MIT1002_01436	0.65	-0.4
1,580,978	+		MIT1002_01436	0.66	-0.3
1,581,033	-		MIT1002_01436	0.73	-0.4
1,581,035	+		MIT1002_01436	0.73	+0.1
1,581,076	-		MIT1002_01436	0.78	+0.6
1,581,086	-		MIT1002_01436	0.79	-0.4
1,581,154	-		MIT1002_01436	0.88	+0.1
1,581,156	+		MIT1002_01436	0.88	-0.6
1,581,164	-		MIT1002_01436	0.89	-0.4
1,581,251	-				+0.1
1,581,318	-				+0.3
1,581,318	-				-0.2
1,581,318	-				-1.4
1,581,318	-				+0.7
1,581,362	+				+0.1
1,581,362	+				+0.4
1,581,405	+				+1.3
1,581,423	-				-0.2
1,581,434	-				-1.1
1,581,434	-				+0.7
1,581,448	+				-2.0
1,581,513	+				-0.3
1,581,603	+		MIT1002_01437	0.23	+0.2
1,581,678	+		MIT1002_01437	0.36	-0.9
1,581,689	+		MIT1002_01437	0.38	-1.4
1,581,691	+		MIT1002_01437	0.38	-0.2
1,581,751	+		MIT1002_01437	0.49	+0.0
1,581,759	-		MIT1002_01437	0.51	-0.0
1,581,759	-		MIT1002_01437	0.51	-0.1
1,581,789	-		MIT1002_01437	0.56	-0.8
1,581,853	+		MIT1002_01437	0.67	-0.6
1,581,882	-		MIT1002_01437	0.72	+0.7
1,581,882	-		MIT1002_01437	0.72	+0.2
1,581,928	+		MIT1002_01437	0.80	+1.0
1,581,928	+		MIT1002_01437	0.80	+1.8
1,581,928	+		MIT1002_01437	0.80	-0.0
1,581,939	-		MIT1002_01437	0.82	-0.7
1,581,949	-		MIT1002_01437	0.84	+0.5
1,582,088	+				+0.4
1,582,096	-				+0.1
1,582,096	-				-0.9
1,582,096	-				+0.3
1,582,153	+		MIT1002_01438	0.11	-1.2
1,582,190	-		MIT1002_01438	0.17	+0.9
1,582,200	+		MIT1002_01438	0.18	-1.1
1,582,420	+		MIT1002_01438	0.51	+0.1
1,582,420	+		MIT1002_01438	0.51	+0.1
1,582,420	+		MIT1002_01438	0.51	-0.3
1,582,427	+		MIT1002_01438	0.52	+0.6
1,582,427	+		MIT1002_01438	0.52	-0.4
1,582,427	+		MIT1002_01438	0.52	+0.3
1,582,427	+		MIT1002_01438	0.52	-0.2
1,582,427	+		MIT1002_01438	0.52	-0.3
1,582,435	-		MIT1002_01438	0.53	-0.1
1,582,435	-		MIT1002_01438	0.53	-0.0
1,582,435	-		MIT1002_01438	0.53	-0.2
1,582,507	-		MIT1002_01438	0.64	+0.4
1,582,542	-		MIT1002_01438	0.69	-0.4
1,582,544	-		MIT1002_01438	0.69	+0.1
1,582,627	+		MIT1002_01438	0.82	+0.5
1,582,635	-		MIT1002_01438	0.83	+1.6
1,582,688	-				-0.2
1,582,909	+				+0.8
1,582,917	-				-0.9
1,582,917	-				-0.7
1,582,920	+				+0.0
1,582,928	-				-1.5
1,582,995	+				-1.4
1,582,998	-				+0.2
1,583,002	+				-0.7
1,583,002	+				-0.7
1,583,002	+				-0.4
1,583,002	+				-1.3
1,583,002	+				-1.8
1,583,003	-				-0.1
1,583,008	-				+0.4
1,583,010	-				+0.1
1,583,010	-				+0.6
1,583,014	+				-0.8