Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01196

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
1,311,598	+		MIT1002_01195	0.54	-1.2
1,311,604	-		MIT1002_01195	0.54	+1.4
1,311,708	+		MIT1002_01195	0.60	+0.2
1,311,716	+		MIT1002_01195	0.60	+0.4
1,311,935	+		MIT1002_01195	0.71	-0.2
1,311,949	+		MIT1002_01195	0.72	-0.5
1,311,981	+		MIT1002_01195	0.73	-0.3
1,311,982	-		MIT1002_01195	0.74	+0.1
1,311,998	-		MIT1002_01195	0.74	+1.2
1,312,066	+		MIT1002_01195	0.78	-0.0
1,312,121	-		MIT1002_01195	0.81	-0.0
1,312,164	-		MIT1002_01195	0.83	+2.3
1,312,166	+		MIT1002_01195	0.83	+1.4
1,312,166	+		MIT1002_01195	0.83	-0.2
1,312,174	-		MIT1002_01195	0.83	+0.3
1,312,244	-		MIT1002_01195	0.87	-1.2
1,312,373	+				-2.8
1,312,373	-				+0.4
1,312,382	+				-0.1
1,312,402	+				+0.6
1,312,402	+				+0.5
1,312,410	-				+1.0
1,312,410	-				+1.4
1,312,410	-				-0.9
1,312,410	-				-1.6
1,312,412	-				-0.3
1,312,442	-				-1.0
1,312,565	-				-0.7
1,312,670	-		MIT1002_01196	0.12	-1.0
1,312,677	+		MIT1002_01196	0.13	-0.8
1,312,743	-		MIT1002_01196	0.23	-1.2
1,312,764	-		MIT1002_01196	0.26	-0.9
1,312,788	-		MIT1002_01196	0.30	-0.0
1,312,795	-		MIT1002_01196	0.31	+0.4
1,312,802	-		MIT1002_01196	0.32	+0.3
1,312,862	+		MIT1002_01196	0.41	+0.6
1,312,901	-		MIT1002_01196	0.47	-1.5
1,312,922	+		MIT1002_01196	0.50	+0.5
1,312,930	-		MIT1002_01196	0.51	+0.3
1,312,932	+		MIT1002_01196	0.52	+0.1
1,312,932	+		MIT1002_01196	0.52	+0.2
1,312,940	-		MIT1002_01196	0.53	-0.8
1,313,005	-		MIT1002_01196	0.62	-0.5
1,313,022	+		MIT1002_01196	0.65	-0.9
1,313,030	-		MIT1002_01196	0.66	-1.7
1,313,051	-		MIT1002_01196	0.69	+0.8
1,313,057	+		MIT1002_01196	0.70	+0.5
1,313,057	+		MIT1002_01196	0.70	-0.9
1,313,057	+		MIT1002_01196	0.70	+0.2
1,313,057	+		MIT1002_01196	0.70	+1.2
1,313,060	-		MIT1002_01196	0.71	+0.4
1,313,065	-		MIT1002_01196	0.71	-0.2
1,313,065	-		MIT1002_01196	0.71	+0.8
1,313,082	+		MIT1002_01196	0.74	-0.4
1,313,082	+		MIT1002_01196	0.74	+1.8
1,313,082	+		MIT1002_01196	0.74	+0.3
1,313,082	+		MIT1002_01196	0.74	-0.0
1,313,090	-		MIT1002_01196	0.75	-0.4
1,313,090	-		MIT1002_01196	0.75	+0.9
1,313,095	-		MIT1002_01196	0.76	-0.7
1,313,095	-		MIT1002_01196	0.76	-0.8
1,313,097	+		MIT1002_01196	0.76	-0.4
1,313,105	-		MIT1002_01196	0.77	-1.1
1,313,105	-		MIT1002_01196	0.77	-0.4
1,313,105	-		MIT1002_01196	0.77	-0.0
1,313,120	-		MIT1002_01196	0.80	-0.3
1,313,194	+				+0.6
1,313,199	+				+2.3
1,313,202	-				-2.9
1,313,228	+				+0.8
1,313,253	+				+0.1
1,313,263	+				-0.5
1,313,263	+				-2.1
1,313,271	-				-1.0
1,313,271	-				-0.4
1,313,271	-				-0.6
1,313,334	-				+0.2
1,313,383	-				-1.2
1,313,405	-				+0.7
1,313,405	-				+0.5
1,313,431	-				+1.0
1,313,434	-				+0.0
1,313,444	+				-0.7
1,313,444	+				+1.2
1,313,444	+				-0.1
1,313,450	-				+1.1
1,313,450	-				+0.8
1,313,452	-				+0.1
1,313,452	-				+0.5
1,313,452	-				+0.3
1,313,452	-				-2.0
1,313,456	+				-0.6
1,313,456	+				+0.3
1,313,492	+				-0.6
1,313,500	-				+0.2
1,313,501	-				+0.2
1,313,566	-		MIT1002_01197	0.13	-2.9
1,313,578	-		MIT1002_01197	0.14	+1.6
1,313,641	-		MIT1002_01197	0.17	+0.1
1,313,693	+		MIT1002_01197	0.20	+0.7
1,313,748	-		MIT1002_01197	0.23	-1.5
1,313,796	+		MIT1002_01197	0.26	-0.1
1,313,796	+		MIT1002_01197	0.26	+1.3
1,313,823	-		MIT1002_01197	0.27	+0.3
1,313,881	-		MIT1002_01197	0.30	+0.9
1,313,925	-		MIT1002_01197	0.33	+1.1
1,313,936	-		MIT1002_01197	0.33	+0.7
1,313,972	-		MIT1002_01197	0.35	-0.0
1,313,980	-		MIT1002_01197	0.36	-0.0
1,313,980	-		MIT1002_01197	0.36	-0.4
1,314,162	+		MIT1002_01197	0.45	+0.5
1,314,187	-		MIT1002_01197	0.47	+2.4
1,314,217	+		MIT1002_01197	0.48	+0.9
1,314,225	+		MIT1002_01197	0.49	+0.3
1,314,225	+		MIT1002_01197	0.49	+0.7
1,314,225	+		MIT1002_01197	0.49	+1.1
1,314,233	-		MIT1002_01197	0.49	+0.4
1,314,233	-		MIT1002_01197	0.49	+0.4