Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01190

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01188 and MIT1002_01189 are separated by 221 nucleotidesMIT1002_01189 and MIT1002_01190 are separated by 2 nucleotidesMIT1002_01190 and MIT1002_01191 are separated by 122 nucleotides MIT1002_01188: MIT1002_01188 - Salmolysin, at 1,301,053 to 1,301,508 _01188 MIT1002_01189: MIT1002_01189 - Transcriptional regulatory protein YehT, at 1,301,730 to 1,302,458 _01189 MIT1002_01190: MIT1002_01190 - Sensor histidine kinase YehU, at 1,302,461 to 1,304,152 _01190 MIT1002_01191: MIT1002_01191 - Carbon starvation protein A, at 1,304,275 to 1,305,768 _01191 Position (kb) 1302 1303 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1301.486 kb on + strandat 1301.493 kb on - strandat 1301.627 kb on - strandat 1301.689 kb on + strandat 1301.772 kb on + strandat 1301.873 kb on - strand, within MIT1002_01189at 1302.050 kb on - strand, within MIT1002_01189at 1302.139 kb on + strand, within MIT1002_01189at 1302.139 kb on + strand, within MIT1002_01189at 1302.147 kb on - strand, within MIT1002_01189at 1302.147 kb on - strand, within MIT1002_01189at 1302.147 kb on - strand, within MIT1002_01189at 1302.176 kb on + strand, within MIT1002_01189at 1302.199 kb on + strand, within MIT1002_01189at 1302.199 kb on - strand, within MIT1002_01189at 1302.204 kb on + strand, within MIT1002_01189at 1302.204 kb on + strand, within MIT1002_01189at 1302.204 kb on + strand, within MIT1002_01189at 1302.214 kb on + strand, within MIT1002_01189at 1302.214 kb on + strand, within MIT1002_01189at 1302.214 kb on + strand, within MIT1002_01189at 1302.220 kb on - strand, within MIT1002_01189at 1302.222 kb on - strand, within MIT1002_01189at 1302.222 kb on - strand, within MIT1002_01189at 1302.236 kb on - strand, within MIT1002_01189at 1302.238 kb on + strand, within MIT1002_01189at 1302.252 kb on + strand, within MIT1002_01189at 1302.301 kb on + strand, within MIT1002_01189at 1302.329 kb on + strand, within MIT1002_01189at 1302.337 kb on - strand, within MIT1002_01189at 1302.337 kb on - strand, within MIT1002_01189at 1302.357 kb on + strand, within MIT1002_01189at 1302.359 kb on - strand, within MIT1002_01189at 1302.395 kb on + strandat 1302.406 kb on - strandat 1302.406 kb on - strandat 1302.528 kb on - strandat 1302.528 kb on - strandat 1302.539 kb on + strandat 1302.571 kb on - strandat 1302.596 kb on + strandat 1302.596 kb on + strandat 1302.604 kb on - strandat 1302.604 kb on - strandat 1302.604 kb on - strandat 1302.629 kb on + strandat 1302.637 kb on - strand, within MIT1002_01190at 1302.673 kb on + strand, within MIT1002_01190at 1302.675 kb on + strand, within MIT1002_01190at 1302.675 kb on + strand, within MIT1002_01190at 1302.681 kb on - strand, within MIT1002_01190at 1302.807 kb on - strand, within MIT1002_01190at 1302.810 kb on + strand, within MIT1002_01190at 1302.826 kb on - strand, within MIT1002_01190at 1302.869 kb on - strand, within MIT1002_01190at 1302.869 kb on - strand, within MIT1002_01190at 1302.869 kb on - strand, within MIT1002_01190at 1302.941 kb on + strand, within MIT1002_01190at 1303.023 kb on + strand, within MIT1002_01190at 1303.023 kb on + strand, within MIT1002_01190at 1303.023 kb on + strand, within MIT1002_01190at 1303.134 kb on + strand, within MIT1002_01190at 1303.183 kb on + strand, within MIT1002_01190at 1303.183 kb on + strand, within MIT1002_01190at 1303.183 kb on + strand, within MIT1002_01190at 1303.183 kb on + strand, within MIT1002_01190at 1303.191 kb on - strand, within MIT1002_01190at 1303.191 kb on - strand, within MIT1002_01190at 1303.199 kb on - strand, within MIT1002_01190at 1303.231 kb on + strand, within MIT1002_01190at 1303.239 kb on - strand, within MIT1002_01190at 1303.239 kb on - strand, within MIT1002_01190at 1303.270 kb on + strand, within MIT1002_01190at 1303.278 kb on - strand, within MIT1002_01190at 1303.297 kb on + strand, within MIT1002_01190at 1303.324 kb on + strand, within MIT1002_01190at 1303.467 kb on + strand, within MIT1002_01190at 1303.483 kb on + strand, within MIT1002_01190at 1303.513 kb on + strand, within MIT1002_01190at 1303.515 kb on + strand, within MIT1002_01190at 1303.523 kb on - strand, within MIT1002_01190at 1303.622 kb on + strand, within MIT1002_01190at 1303.624 kb on + strand, within MIT1002_01190at 1303.630 kb on - strand, within MIT1002_01190at 1303.630 kb on - strand, within MIT1002_01190at 1303.630 kb on - strand, within MIT1002_01190at 1303.630 kb on - strand, within MIT1002_01190at 1303.630 kb on - strand, within MIT1002_01190at 1303.630 kb on - strand, within MIT1002_01190at 1303.630 kb on - strand, within MIT1002_01190at 1303.649 kb on - strand, within MIT1002_01190at 1303.649 kb on - strand, within MIT1002_01190at 1303.681 kb on + strand, within MIT1002_01190at 1303.690 kb on + strand, within MIT1002_01190at 1303.698 kb on - strand, within MIT1002_01190at 1303.698 kb on - strand, within MIT1002_01190at 1303.721 kb on - strand, within MIT1002_01190at 1303.787 kb on - strand, within MIT1002_01190at 1303.787 kb on - strand, within MIT1002_01190at 1303.911 kb on - strand, within MIT1002_01190at 1303.925 kb on + strand, within MIT1002_01190at 1303.926 kb on + strand, within MIT1002_01190at 1303.933 kb on - strand, within MIT1002_01190at 1304.082 kb on + strandat 1304.090 kb on - strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.100 kb on - strandat 1304.100 kb on - strandat 1304.100 kb on - strandat 1304.100 kb on - strandat 1304.154 kb on - strandat 1304.154 kb on - strandat 1304.190 kb on + strandat 1304.438 kb on + strand, within MIT1002_01191at 1304.496 kb on + strand, within MIT1002_01191at 1304.530 kb on + strand, within MIT1002_01191at 1304.543 kb on + strand, within MIT1002_01191at 1304.634 kb on + strand, within MIT1002_01191at 1304.651 kb on + strand, within MIT1002_01191at 1304.659 kb on - strand, within MIT1002_01191at 1304.659 kb on - strand, within MIT1002_01191at 1304.687 kb on + strand, within MIT1002_01191at 1304.703 kb on - strand, within MIT1002_01191at 1304.703 kb on - strand, within MIT1002_01191at 1304.889 kb on + strand, within MIT1002_01191at 1304.890 kb on + strand, within MIT1002_01191at 1304.904 kb on + strand, within MIT1002_01191at 1304.973 kb on + strand, within MIT1002_01191at 1305.046 kb on - strand, within MIT1002_01191at 1305.119 kb on + strand, within MIT1002_01191at 1305.124 kb on - strand, within MIT1002_01191at 1305.129 kb on + strand, within MIT1002_01191at 1305.129 kb on + strand, within MIT1002_01191at 1305.137 kb on - strand, within MIT1002_01191at 1305.137 kb on - strand, within MIT1002_01191at 1305.142 kb on - strand, within MIT1002_01191

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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1,301,486 + +0.6
1,301,493 - -0.0
1,301,627 - -1.1
1,301,689 + +1.6
1,301,772 + +1.0
1,301,873 - MIT1002_01189 0.20 -0.4
1,302,050 - MIT1002_01189 0.44 +1.0
1,302,139 + MIT1002_01189 0.56 +0.5
1,302,139 + MIT1002_01189 0.56 -0.5
1,302,147 - MIT1002_01189 0.57 +0.8
1,302,147 - MIT1002_01189 0.57 -0.3
1,302,147 - MIT1002_01189 0.57 +0.1
1,302,176 + MIT1002_01189 0.61 +0.2
1,302,199 + MIT1002_01189 0.64 -0.1
1,302,199 - MIT1002_01189 0.64 -1.3
1,302,204 + MIT1002_01189 0.65 +1.0
1,302,204 + MIT1002_01189 0.65 +0.8
1,302,204 + MIT1002_01189 0.65 -0.3
1,302,214 + MIT1002_01189 0.66 +0.3
1,302,214 + MIT1002_01189 0.66 -0.1
1,302,214 + MIT1002_01189 0.66 +1.0
1,302,220 - MIT1002_01189 0.67 +1.3
1,302,222 - MIT1002_01189 0.67 -0.8
1,302,222 - MIT1002_01189 0.67 +0.6
1,302,236 - MIT1002_01189 0.69 +0.6
1,302,238 + MIT1002_01189 0.70 +0.6
1,302,252 + MIT1002_01189 0.72 +0.7
1,302,301 + MIT1002_01189 0.78 +0.5
1,302,329 + MIT1002_01189 0.82 -0.5
1,302,337 - MIT1002_01189 0.83 +0.1
1,302,337 - MIT1002_01189 0.83 -0.3
1,302,357 + MIT1002_01189 0.86 -0.7
1,302,359 - MIT1002_01189 0.86 +0.6
1,302,395 + +0.3
1,302,406 - +0.2
1,302,406 - +1.3
1,302,528 - -1.2
1,302,528 - +1.8
1,302,539 + +0.6
1,302,571 - +0.4
1,302,596 + +0.3
1,302,596 + +0.0
1,302,604 - -0.7
1,302,604 - +0.7
1,302,604 - -0.1
1,302,629 + +1.7
1,302,637 - MIT1002_01190 0.10 +0.3
1,302,673 + MIT1002_01190 0.13 -2.1
1,302,675 + MIT1002_01190 0.13 -0.5
1,302,675 + MIT1002_01190 0.13 +1.2
1,302,681 - MIT1002_01190 0.13 -1.3
1,302,807 - MIT1002_01190 0.20 +0.4
1,302,810 + MIT1002_01190 0.21 +0.5
1,302,826 - MIT1002_01190 0.22 -0.7
1,302,869 - MIT1002_01190 0.24 +0.6
1,302,869 - MIT1002_01190 0.24 +0.0
1,302,869 - MIT1002_01190 0.24 -0.2
1,302,941 + MIT1002_01190 0.28 +0.8
1,303,023 + MIT1002_01190 0.33 -0.6
1,303,023 + MIT1002_01190 0.33 -0.3
1,303,023 + MIT1002_01190 0.33 +1.3
1,303,134 + MIT1002_01190 0.40 +1.3
1,303,183 + MIT1002_01190 0.43 +2.8
1,303,183 + MIT1002_01190 0.43 +0.5
1,303,183 + MIT1002_01190 0.43 +0.1
1,303,183 + MIT1002_01190 0.43 -0.5
1,303,191 - MIT1002_01190 0.43 +0.1
1,303,191 - MIT1002_01190 0.43 +0.8
1,303,199 - MIT1002_01190 0.44 -0.3
1,303,231 + MIT1002_01190 0.46 +0.4
1,303,239 - MIT1002_01190 0.46 +0.5
1,303,239 - MIT1002_01190 0.46 +0.1
1,303,270 + MIT1002_01190 0.48 +1.1
1,303,278 - MIT1002_01190 0.48 +0.1
1,303,297 + MIT1002_01190 0.49 +1.1
1,303,324 + MIT1002_01190 0.51 -1.2
1,303,467 + MIT1002_01190 0.59 +0.7
1,303,483 + MIT1002_01190 0.60 +2.2
1,303,513 + MIT1002_01190 0.62 +1.3
1,303,515 + MIT1002_01190 0.62 +0.0
1,303,523 - MIT1002_01190 0.63 -0.3
1,303,622 + MIT1002_01190 0.69 -0.2
1,303,624 + MIT1002_01190 0.69 +1.0
1,303,630 - MIT1002_01190 0.69 +0.0
1,303,630 - MIT1002_01190 0.69 -0.0
1,303,630 - MIT1002_01190 0.69 +0.6
1,303,630 - MIT1002_01190 0.69 -1.6
1,303,630 - MIT1002_01190 0.69 +0.1
1,303,630 - MIT1002_01190 0.69 +1.9
1,303,630 - MIT1002_01190 0.69 +1.1
1,303,649 - MIT1002_01190 0.70 -2.7
1,303,649 - MIT1002_01190 0.70 -0.0
1,303,681 + MIT1002_01190 0.72 +0.1
1,303,690 + MIT1002_01190 0.73 +1.1
1,303,698 - MIT1002_01190 0.73 +0.9
1,303,698 - MIT1002_01190 0.73 +0.3
1,303,721 - MIT1002_01190 0.74 -3.1
1,303,787 - MIT1002_01190 0.78 -0.2
1,303,787 - MIT1002_01190 0.78 +0.4
1,303,911 - MIT1002_01190 0.86 +0.3
1,303,925 + MIT1002_01190 0.87 +1.8
1,303,926 + MIT1002_01190 0.87 +0.1
1,303,933 - MIT1002_01190 0.87 +0.2
1,304,082 + -1.8
1,304,090 - -1.5
1,304,092 + -0.2
1,304,092 + -1.0
1,304,092 + +1.5
1,304,092 + -1.6
1,304,100 - +0.9
1,304,100 - +1.2
1,304,100 - -0.3
1,304,100 - -0.1
1,304,154 - -0.3
1,304,154 - -1.8
1,304,190 + -0.0
1,304,438 + MIT1002_01191 0.11 +0.5
1,304,496 + MIT1002_01191 0.15 +1.0
1,304,530 + MIT1002_01191 0.17 +0.1
1,304,543 + MIT1002_01191 0.18 +0.2
1,304,634 + MIT1002_01191 0.24 -0.1
1,304,651 + MIT1002_01191 0.25 +0.6
1,304,659 - MIT1002_01191 0.26 +1.0
1,304,659 - MIT1002_01191 0.26 +0.3
1,304,687 + MIT1002_01191 0.28 -0.9
1,304,703 - MIT1002_01191 0.29 -3.0
1,304,703 - MIT1002_01191 0.29 +1.2
1,304,889 + MIT1002_01191 0.41 +0.1
1,304,890 + MIT1002_01191 0.41 -0.1
1,304,904 + MIT1002_01191 0.42 -0.4
1,304,973 + MIT1002_01191 0.47 -0.7
1,305,046 - MIT1002_01191 0.52 +0.1
1,305,119 + MIT1002_01191 0.56 +1.1
1,305,124 - MIT1002_01191 0.57 -2.4
1,305,129 + MIT1002_01191 0.57 -0.5
1,305,129 + MIT1002_01191 0.57 +0.1
1,305,137 - MIT1002_01191 0.58 -0.0
1,305,137 - MIT1002_01191 0.58 +0.1
1,305,142 - MIT1002_01191 0.58 +0.0

Or see this region's nucleotide sequence