Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01071

Experiment: monoculture; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 2
1,177,789	-		MIT1002_01068	0.36	+0.5
1,177,840	-		MIT1002_01068	0.57	+0.4
1,177,923	+				-0.1
1,177,932	-				-1.9
1,177,942	-				+1.1
1,178,020	-		MIT1002_01069	0.14	+1.6
1,178,079	-		MIT1002_01069	0.36	-0.4
1,178,102	+		MIT1002_01069	0.45	+0.2
1,178,118	+		MIT1002_01069	0.52	-1.3
1,178,128	+		MIT1002_01069	0.55	+0.8
1,178,304	-				+0.7
1,178,304	-				+0.5
1,178,433	+		MIT1002_01070	0.30	+1.8
1,178,441	-		MIT1002_01070	0.31	-1.7
1,178,446	-		MIT1002_01070	0.32	-0.9
1,178,542	+		MIT1002_01070	0.49	+0.1
1,178,544	-		MIT1002_01070	0.50	+0.0
1,178,544	-		MIT1002_01070	0.50	-0.3
1,178,544	-		MIT1002_01070	0.50	-0.4
1,178,550	-		MIT1002_01070	0.51	-0.5
1,178,550	-		MIT1002_01070	0.51	+1.3
1,178,550	-		MIT1002_01070	0.51	-1.6
1,178,565	-		MIT1002_01070	0.54	-0.1
1,178,577	+		MIT1002_01070	0.56	-0.6
1,178,597	-		MIT1002_01070	0.59	-0.2
1,178,597	-		MIT1002_01070	0.59	-2.9
1,178,597	-		MIT1002_01070	0.59	+0.9
1,178,597	-		MIT1002_01070	0.59	-0.3
1,178,674	-		MIT1002_01070	0.73	+0.1
1,178,745	+		MIT1002_01070	0.86	+1.1
1,178,927	-		MIT1002_01071	0.41	-0.9
1,178,927	-		MIT1002_01071	0.41	-0.4
1,178,941	+		MIT1002_01071	0.45	-0.2
1,178,987	+		MIT1002_01071	0.58	-0.6
1,178,995	-		MIT1002_01071	0.61	+0.2
1,178,995	-		MIT1002_01071	0.61	-0.9
1,178,995	-		MIT1002_01071	0.61	-2.7
1,178,995	-		MIT1002_01071	0.61	-0.5
1,179,024	+		MIT1002_01071	0.69	+0.8
1,179,034	+		MIT1002_01071	0.72	+0.5
1,179,034	+		MIT1002_01071	0.72	-1.3
1,179,042	-		MIT1002_01071	0.74	+0.4
1,179,052	-		MIT1002_01071	0.77	-0.8
1,179,068	+		MIT1002_01071	0.82	-0.3
1,179,068	+		MIT1002_01071	0.82	-1.4
1,179,068	+		MIT1002_01071	0.82	+1.1
1,179,074	+		MIT1002_01071	0.83	-0.3
1,179,197	+				+0.3
1,179,202	+				-0.6
1,179,236	-				-1.3
1,179,238	+				-0.7
1,179,296	+				-0.3
1,179,356	-				-0.2
1,179,363	-				+1.0
1,179,372	+				-1.2
1,179,372	+				+0.6
1,179,392	+				-0.2
1,179,395	+				+0.4
1,179,405	-				-0.7
1,179,473	+				+0.4
1,179,481	-				+0.6
1,179,566	+				+0.3
1,179,574	-				-4.7
1,179,574	-				+0.5
1,179,575	-				-0.6
1,179,611	-				+1.1
1,179,622	-				+0.0
1,179,622	-				+0.1
1,179,731	+		MIT1002_01072	0.21	-1.5
1,179,731	+		MIT1002_01072	0.21	+1.2
1,179,731	+		MIT1002_01072	0.21	-1.4
1,179,731	+		MIT1002_01072	0.21	-1.4
1,179,731	+		MIT1002_01072	0.21	+0.1
1,179,739	-		MIT1002_01072	0.22	-1.3
1,179,739	-		MIT1002_01072	0.22	+0.8
1,179,739	-		MIT1002_01072	0.22	-1.1
1,179,766	+		MIT1002_01072	0.26	-0.1
1,179,777	-		MIT1002_01072	0.27	+0.4
1,179,790	+		MIT1002_01072	0.29	+1.1
1,179,790	+		MIT1002_01072	0.29	-0.3
1,179,798	-		MIT1002_01072	0.30	-2.4
1,179,883	-		MIT1002_01072	0.41	+1.5
1,179,891	-		MIT1002_01072	0.42	+1.9
1,179,956	+		MIT1002_01072	0.50	+1.0
1,179,962	-		MIT1002_01072	0.51	+0.6
1,179,962	-		MIT1002_01072	0.51	-0.0
1,179,962	-		MIT1002_01072	0.51	+1.2
1,179,999	+		MIT1002_01072	0.56	+0.0
1,180,090	-		MIT1002_01072	0.67	+0.7
1,180,098	-		MIT1002_01072	0.68	+1.1
1,180,113	-		MIT1002_01072	0.70	-1.0