Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00851

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00850 and MIT1002_00851 overlap by 19 nucleotidesMIT1002_00851 and MIT1002_00853 are separated by 10 nucleotides MIT1002_00850: MIT1002_00850 - potassium/proton antiporter, at 931,683 to 933,146 _00850 MIT1002_00851: MIT1002_00851 - hypothetical protein, at 933,128 to 933,592 _00851 MIT1002_00853: MIT1002_00853 - hypothetical protein, at 933,603 to 936,077 _00853 Position (kb) 933 934Strain fitness (log2 ratio) -1 0 1 2 3at 932.221 kb on + strand, within MIT1002_00850at 932.226 kb on - strand, within MIT1002_00850at 932.230 kb on - strand, within MIT1002_00850at 932.277 kb on + strand, within MIT1002_00850at 932.329 kb on + strand, within MIT1002_00850at 932.336 kb on - strand, within MIT1002_00850at 932.343 kb on + strand, within MIT1002_00850at 932.351 kb on - strand, within MIT1002_00850at 932.366 kb on + strand, within MIT1002_00850at 932.366 kb on - strand, within MIT1002_00850at 932.383 kb on + strand, within MIT1002_00850at 932.451 kb on + strand, within MIT1002_00850at 932.469 kb on - strand, within MIT1002_00850at 932.474 kb on + strand, within MIT1002_00850at 932.474 kb on + strand, within MIT1002_00850at 932.474 kb on + strand, within MIT1002_00850at 932.482 kb on - strand, within MIT1002_00850at 932.504 kb on + strand, within MIT1002_00850at 932.715 kb on - strand, within MIT1002_00850at 932.818 kb on + strand, within MIT1002_00850at 932.828 kb on + strand, within MIT1002_00850at 932.828 kb on + strand, within MIT1002_00850at 932.912 kb on - strand, within MIT1002_00850at 932.920 kb on - strand, within MIT1002_00850at 932.931 kb on - strand, within MIT1002_00850at 932.931 kb on - strand, within MIT1002_00850at 932.940 kb on - strand, within MIT1002_00850at 932.963 kb on + strand, within MIT1002_00850at 932.971 kb on - strand, within MIT1002_00850at 933.042 kb on - strandat 933.042 kb on - strandat 933.124 kb on + strandat 933.136 kb on + strandat 933.140 kb on + strandat 933.144 kb on - strandat 933.148 kb on + strandat 933.637 kb on + strandat 933.637 kb on + strandat 933.637 kb on + strandat 933.645 kb on - strandat 933.735 kb on + strandat 933.743 kb on - strandat 933.774 kb on + strandat 933.789 kb on + strandat 933.891 kb on + strand, within MIT1002_00853at 933.896 kb on + strand, within MIT1002_00853at 933.918 kb on - strand, within MIT1002_00853at 933.918 kb on - strand, within MIT1002_00853at 933.928 kb on - strand, within MIT1002_00853at 933.954 kb on + strand, within MIT1002_00853at 933.973 kb on - strand, within MIT1002_00853at 934.041 kb on + strand, within MIT1002_00853at 934.049 kb on - strand, within MIT1002_00853at 934.049 kb on - strand, within MIT1002_00853at 934.049 kb on - strand, within MIT1002_00853at 934.111 kb on - strand, within MIT1002_00853at 934.124 kb on + strand, within MIT1002_00853at 934.145 kb on + strand, within MIT1002_00853at 934.159 kb on + strand, within MIT1002_00853at 934.159 kb on + strand, within MIT1002_00853at 934.181 kb on + strand, within MIT1002_00853at 934.189 kb on - strand, within MIT1002_00853at 934.193 kb on + strand, within MIT1002_00853at 934.219 kb on + strand, within MIT1002_00853at 934.260 kb on + strand, within MIT1002_00853at 934.260 kb on + strand, within MIT1002_00853at 934.263 kb on - strand, within MIT1002_00853at 934.369 kb on + strand, within MIT1002_00853at 934.369 kb on + strand, within MIT1002_00853at 934.377 kb on - strand, within MIT1002_00853at 934.386 kb on - strand, within MIT1002_00853at 934.386 kb on - strand, within MIT1002_00853at 934.386 kb on - strand, within MIT1002_00853at 934.417 kb on + strand, within MIT1002_00853at 934.456 kb on + strand, within MIT1002_00853at 934.464 kb on - strand, within MIT1002_00853at 934.469 kb on - strand, within MIT1002_00853

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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932,221 + MIT1002_00850 0.37 +0.1
932,226 - MIT1002_00850 0.37 -1.2
932,230 - MIT1002_00850 0.37 -1.7
932,277 + MIT1002_00850 0.41 -0.5
932,329 + MIT1002_00850 0.44 +1.0
932,336 - MIT1002_00850 0.45 -0.2
932,343 + MIT1002_00850 0.45 +0.5
932,351 - MIT1002_00850 0.46 -0.2
932,366 + MIT1002_00850 0.47 +0.2
932,366 - MIT1002_00850 0.47 -0.7
932,383 + MIT1002_00850 0.48 +1.8
932,451 + MIT1002_00850 0.52 +1.0
932,469 - MIT1002_00850 0.54 +0.9
932,474 + MIT1002_00850 0.54 +1.0
932,474 + MIT1002_00850 0.54 -1.6
932,474 + MIT1002_00850 0.54 +2.0
932,482 - MIT1002_00850 0.55 +0.5
932,504 + MIT1002_00850 0.56 -1.5
932,715 - MIT1002_00850 0.70 +0.2
932,818 + MIT1002_00850 0.78 +0.6
932,828 + MIT1002_00850 0.78 -0.5
932,828 + MIT1002_00850 0.78 +0.5
932,912 - MIT1002_00850 0.84 -1.2
932,920 - MIT1002_00850 0.84 +3.0
932,931 - MIT1002_00850 0.85 +0.2
932,931 - MIT1002_00850 0.85 -0.1
932,940 - MIT1002_00850 0.86 +0.4
932,963 + MIT1002_00850 0.87 +2.1
932,971 - MIT1002_00850 0.88 +0.5
933,042 - +0.1
933,042 - +0.7
933,124 + -0.8
933,136 + -0.7
933,140 + +0.9
933,144 - -1.1
933,148 + +1.3
933,637 + -0.9
933,637 + -0.3
933,637 + -1.1
933,645 - +0.8
933,735 + -0.2
933,743 - -0.3
933,774 + -0.4
933,789 + +1.3
933,891 + MIT1002_00853 0.12 -0.2
933,896 + MIT1002_00853 0.12 +0.0
933,918 - MIT1002_00853 0.13 +0.3
933,918 - MIT1002_00853 0.13 +0.9
933,928 - MIT1002_00853 0.13 -0.6
933,954 + MIT1002_00853 0.14 +0.5
933,973 - MIT1002_00853 0.15 +0.9
934,041 + MIT1002_00853 0.18 -1.4
934,049 - MIT1002_00853 0.18 +2.1
934,049 - MIT1002_00853 0.18 +0.1
934,049 - MIT1002_00853 0.18 +0.1
934,111 - MIT1002_00853 0.21 +0.3
934,124 + MIT1002_00853 0.21 +1.0
934,145 + MIT1002_00853 0.22 +0.1
934,159 + MIT1002_00853 0.22 -0.6
934,159 + MIT1002_00853 0.22 +0.5
934,181 + MIT1002_00853 0.23 -0.4
934,189 - MIT1002_00853 0.24 +0.4
934,193 + MIT1002_00853 0.24 +0.1
934,219 + MIT1002_00853 0.25 +0.0
934,260 + MIT1002_00853 0.27 -0.7
934,260 + MIT1002_00853 0.27 -1.1
934,263 - MIT1002_00853 0.27 +0.2
934,369 + MIT1002_00853 0.31 +0.6
934,369 + MIT1002_00853 0.31 +1.2
934,377 - MIT1002_00853 0.31 +0.5
934,386 - MIT1002_00853 0.32 -0.5
934,386 - MIT1002_00853 0.32 +0.7
934,386 - MIT1002_00853 0.32 +0.1
934,417 + MIT1002_00853 0.33 -0.6
934,456 + MIT1002_00853 0.34 +0.2
934,464 - MIT1002_00853 0.35 +1.8
934,469 - MIT1002_00853 0.35 +0.0

Or see this region's nucleotide sequence