Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00690

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00689 and MIT1002_00690 are separated by 317 nucleotidesMIT1002_00690 and MIT1002_00691 are separated by 5 nucleotidesMIT1002_00691 and MIT1002_00692 are separated by 31 nucleotides MIT1002_00689: MIT1002_00689 - Ribosomal RNA large subunit methyltransferase G, at 753,305 to 754,537 _00689 MIT1002_00690: MIT1002_00690 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 754,855 to 755,496 _00690 MIT1002_00691: MIT1002_00691 - transcriptional regulator BolA, at 755,502 to 755,822 _00691 MIT1002_00692: MIT1002_00692 - PAP2 superfamily protein, at 755,854 to 756,546 _00692 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 753.872 kb on - strand, within MIT1002_00689at 753.893 kb on - strand, within MIT1002_00689at 753.893 kb on - strand, within MIT1002_00689at 753.967 kb on - strand, within MIT1002_00689at 754.096 kb on + strand, within MIT1002_00689at 754.096 kb on + strand, within MIT1002_00689at 754.104 kb on - strand, within MIT1002_00689at 754.104 kb on - strand, within MIT1002_00689at 754.113 kb on + strand, within MIT1002_00689at 754.153 kb on + strand, within MIT1002_00689at 754.172 kb on + strand, within MIT1002_00689at 754.232 kb on + strand, within MIT1002_00689at 754.246 kb on - strand, within MIT1002_00689at 754.420 kb on - strandat 754.421 kb on - strandat 754.443 kb on + strandat 754.443 kb on + strandat 754.443 kb on + strandat 754.448 kb on + strandat 754.638 kb on + strandat 754.638 kb on + strandat 754.646 kb on - strandat 754.674 kb on + strandat 754.679 kb on + strandat 754.895 kb on - strandat 754.950 kb on + strand, within MIT1002_00690at 754.950 kb on + strand, within MIT1002_00690at 754.991 kb on - strand, within MIT1002_00690at 755.001 kb on - strand, within MIT1002_00690at 755.053 kb on + strand, within MIT1002_00690at 755.084 kb on + strand, within MIT1002_00690at 755.091 kb on - strand, within MIT1002_00690at 755.149 kb on - strand, within MIT1002_00690at 755.156 kb on + strand, within MIT1002_00690at 755.186 kb on - strand, within MIT1002_00690at 755.190 kb on + strand, within MIT1002_00690at 755.224 kb on + strand, within MIT1002_00690at 755.224 kb on + strand, within MIT1002_00690at 755.232 kb on - strand, within MIT1002_00690at 755.279 kb on + strand, within MIT1002_00690at 755.295 kb on + strand, within MIT1002_00690at 755.382 kb on + strand, within MIT1002_00690at 755.385 kb on - strand, within MIT1002_00690at 755.428 kb on - strand, within MIT1002_00690at 755.440 kb on - strandat 755.453 kb on + strandat 755.486 kb on + strandat 755.571 kb on - strand, within MIT1002_00691at 755.571 kb on - strand, within MIT1002_00691at 755.640 kb on + strand, within MIT1002_00691at 755.715 kb on + strand, within MIT1002_00691at 755.723 kb on - strand, within MIT1002_00691at 755.730 kb on + strand, within MIT1002_00691at 755.735 kb on + strand, within MIT1002_00691at 755.760 kb on + strand, within MIT1002_00691at 755.768 kb on - strand, within MIT1002_00691at 755.794 kb on + strandat 755.802 kb on + strandat 755.802 kb on - strandat 755.899 kb on - strandat 755.921 kb on + strandat 755.923 kb on + strandat 755.931 kb on - strand, within MIT1002_00692at 755.931 kb on - strand, within MIT1002_00692at 755.931 kb on - strand, within MIT1002_00692at 755.945 kb on - strand, within MIT1002_00692at 755.971 kb on + strand, within MIT1002_00692at 755.979 kb on - strand, within MIT1002_00692at 756.000 kb on - strand, within MIT1002_00692at 756.004 kb on + strand, within MIT1002_00692at 756.076 kb on + strand, within MIT1002_00692at 756.094 kb on - strand, within MIT1002_00692at 756.135 kb on - strand, within MIT1002_00692at 756.136 kb on - strand, within MIT1002_00692at 756.254 kb on + strand, within MIT1002_00692at 756.262 kb on - strand, within MIT1002_00692at 756.274 kb on + strand, within MIT1002_00692at 756.281 kb on + strand, within MIT1002_00692at 756.284 kb on + strand, within MIT1002_00692at 756.289 kb on - strand, within MIT1002_00692at 756.367 kb on + strand, within MIT1002_00692at 756.409 kb on + strand, within MIT1002_00692at 756.409 kb on + strand, within MIT1002_00692

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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753,872 - MIT1002_00689 0.46 -0.4
753,893 - MIT1002_00689 0.48 -0.1
753,893 - MIT1002_00689 0.48 +0.2
753,967 - MIT1002_00689 0.54 -0.5
754,096 + MIT1002_00689 0.64 +0.4
754,096 + MIT1002_00689 0.64 -0.1
754,104 - MIT1002_00689 0.65 +0.8
754,104 - MIT1002_00689 0.65 +0.1
754,113 + MIT1002_00689 0.66 +0.6
754,153 + MIT1002_00689 0.69 +0.5
754,172 + MIT1002_00689 0.70 -0.1
754,232 + MIT1002_00689 0.75 -0.1
754,246 - MIT1002_00689 0.76 +1.5
754,420 - -2.5
754,421 - +0.9
754,443 + +0.7
754,443 + -1.4
754,443 + -0.1
754,448 + +1.1
754,638 + +0.7
754,638 + +0.2
754,646 - +0.2
754,674 + -0.1
754,679 + +0.9
754,895 - -1.1
754,950 + MIT1002_00690 0.15 +0.7
754,950 + MIT1002_00690 0.15 +0.2
754,991 - MIT1002_00690 0.21 +0.7
755,001 - MIT1002_00690 0.23 +0.6
755,053 + MIT1002_00690 0.31 -1.4
755,084 + MIT1002_00690 0.36 -0.6
755,091 - MIT1002_00690 0.37 -0.0
755,149 - MIT1002_00690 0.46 -0.8
755,156 + MIT1002_00690 0.47 +1.2
755,186 - MIT1002_00690 0.52 +0.4
755,190 + MIT1002_00690 0.52 -0.3
755,224 + MIT1002_00690 0.57 -0.0
755,224 + MIT1002_00690 0.57 -0.2
755,232 - MIT1002_00690 0.59 +0.7
755,279 + MIT1002_00690 0.66 +0.1
755,295 + MIT1002_00690 0.69 +1.4
755,382 + MIT1002_00690 0.82 +1.2
755,385 - MIT1002_00690 0.83 +0.1
755,428 - MIT1002_00690 0.89 +0.8
755,440 - +0.6
755,453 + -0.7
755,486 + +1.9
755,571 - MIT1002_00691 0.21 -1.4
755,571 - MIT1002_00691 0.21 +0.3
755,640 + MIT1002_00691 0.43 -0.1
755,715 + MIT1002_00691 0.66 -0.8
755,723 - MIT1002_00691 0.69 +0.4
755,730 + MIT1002_00691 0.71 -0.4
755,735 + MIT1002_00691 0.73 -0.1
755,760 + MIT1002_00691 0.80 +0.9
755,768 - MIT1002_00691 0.83 +0.3
755,794 + -1.9
755,802 + +0.6
755,802 - -1.0
755,899 - +0.2
755,921 + +0.3
755,923 + -0.5
755,931 - MIT1002_00692 0.11 +0.5
755,931 - MIT1002_00692 0.11 +0.2
755,931 - MIT1002_00692 0.11 -0.4
755,945 - MIT1002_00692 0.13 -1.7
755,971 + MIT1002_00692 0.17 -0.3
755,979 - MIT1002_00692 0.18 +0.2
756,000 - MIT1002_00692 0.21 +0.8
756,004 + MIT1002_00692 0.22 +0.3
756,076 + MIT1002_00692 0.32 -1.0
756,094 - MIT1002_00692 0.35 -0.5
756,135 - MIT1002_00692 0.41 +1.0
756,136 - MIT1002_00692 0.41 +0.1
756,254 + MIT1002_00692 0.58 +0.6
756,262 - MIT1002_00692 0.59 -0.6
756,274 + MIT1002_00692 0.61 -0.8
756,281 + MIT1002_00692 0.62 -1.9
756,284 + MIT1002_00692 0.62 +1.1
756,289 - MIT1002_00692 0.63 -0.7
756,367 + MIT1002_00692 0.74 -0.3
756,409 + MIT1002_00692 0.80 -0.5
756,409 + MIT1002_00692 0.80 +0.1

Or see this region's nucleotide sequence