Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00679

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00678 and MIT1002_00679 are separated by 102 nucleotidesMIT1002_00679 and MIT1002_00680 are separated by 278 nucleotidesMIT1002_00680 and MIT1002_00681 are separated by 1 nucleotides MIT1002_00678: MIT1002_00678 - putative periplasmic lipoprotein, at 742,356 to 743,651 _00678 MIT1002_00679: MIT1002_00679 - hypothetical protein, at 743,754 to 744,086 _00679 MIT1002_00680: MIT1002_00680 - hypothetical protein, at 744,365 to 744,556 _00680 MIT1002_00681: MIT1002_00681 - L-lysine 2,3-aminomutase, at 744,558 to 745,583 _00681 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 742.775 kb on - strand, within MIT1002_00678at 742.834 kb on - strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 743.039 kb on - strand, within MIT1002_00678at 743.127 kb on + strand, within MIT1002_00678at 743.201 kb on - strand, within MIT1002_00678at 743.237 kb on + strand, within MIT1002_00678at 743.237 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.268 kb on - strand, within MIT1002_00678at 743.298 kb on + strand, within MIT1002_00678at 743.366 kb on + strand, within MIT1002_00678at 743.382 kb on + strand, within MIT1002_00678at 743.389 kb on - strand, within MIT1002_00678at 743.390 kb on - strand, within MIT1002_00678at 743.443 kb on - strand, within MIT1002_00678at 743.447 kb on + strand, within MIT1002_00678at 743.494 kb on - strand, within MIT1002_00678at 743.549 kb on + strandat 743.564 kb on + strandat 743.572 kb on - strandat 743.660 kb on - strandat 743.668 kb on - strandat 743.668 kb on - strandat 743.729 kb on - strandat 743.788 kb on + strand, within MIT1002_00679at 743.910 kb on - strand, within MIT1002_00679at 743.923 kb on + strand, within MIT1002_00679at 743.925 kb on + strand, within MIT1002_00679at 744.021 kb on - strand, within MIT1002_00679at 744.029 kb on + strand, within MIT1002_00679at 744.047 kb on + strand, within MIT1002_00679at 744.069 kb on - strandat 744.119 kb on + strandat 744.143 kb on - strandat 744.169 kb on - strandat 744.286 kb on + strandat 744.301 kb on - strandat 744.303 kb on + strandat 744.303 kb on + strandat 744.309 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.378 kb on + strandat 744.386 kb on - strand, within MIT1002_00680at 744.386 kb on - strand, within MIT1002_00680at 744.387 kb on + strand, within MIT1002_00680at 744.407 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.431 kb on - strand, within MIT1002_00680at 744.441 kb on + strand, within MIT1002_00680at 744.478 kb on + strand, within MIT1002_00680at 744.539 kb on + strandat 744.547 kb on - strandat 744.569 kb on + strandat 744.749 kb on - strand, within MIT1002_00681at 744.754 kb on + strand, within MIT1002_00681at 744.762 kb on - strand, within MIT1002_00681at 744.836 kb on + strand, within MIT1002_00681at 744.836 kb on + strand, within MIT1002_00681at 744.844 kb on - strand, within MIT1002_00681at 744.845 kb on - strand, within MIT1002_00681at 744.851 kb on + strand, within MIT1002_00681at 744.859 kb on - strand, within MIT1002_00681at 744.888 kb on + strand, within MIT1002_00681at 744.896 kb on - strand, within MIT1002_00681at 744.941 kb on - strand, within MIT1002_00681

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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742,775 - MIT1002_00678 0.32 -0.2
742,834 - MIT1002_00678 0.37 -0.1
742,918 + MIT1002_00678 0.43 +1.0
742,918 + MIT1002_00678 0.43 -0.1
743,039 - MIT1002_00678 0.53 -2.9
743,127 + MIT1002_00678 0.59 +0.0
743,201 - MIT1002_00678 0.65 -1.1
743,237 + MIT1002_00678 0.68 -0.7
743,237 + MIT1002_00678 0.68 +0.5
743,245 + MIT1002_00678 0.69 +2.0
743,245 + MIT1002_00678 0.69 -0.5
743,245 + MIT1002_00678 0.69 +0.8
743,268 - MIT1002_00678 0.70 +1.7
743,298 + MIT1002_00678 0.73 +1.5
743,366 + MIT1002_00678 0.78 +0.9
743,382 + MIT1002_00678 0.79 -1.1
743,389 - MIT1002_00678 0.80 -0.3
743,390 - MIT1002_00678 0.80 -0.1
743,443 - MIT1002_00678 0.84 -0.0
743,447 + MIT1002_00678 0.84 +0.8
743,494 - MIT1002_00678 0.88 -0.4
743,549 + +0.3
743,564 + -0.4
743,572 - +0.8
743,660 - +0.5
743,668 - +0.9
743,668 - -0.5
743,729 - -0.4
743,788 + MIT1002_00679 0.10 +1.1
743,910 - MIT1002_00679 0.47 -2.1
743,923 + MIT1002_00679 0.51 +0.3
743,925 + MIT1002_00679 0.51 -0.1
744,021 - MIT1002_00679 0.80 +0.8
744,029 + MIT1002_00679 0.83 +1.4
744,047 + MIT1002_00679 0.88 +0.3
744,069 - -1.9
744,119 + -1.2
744,143 - +0.9
744,169 - +0.6
744,286 + -1.1
744,301 - +1.1
744,303 + -0.8
744,303 + -1.2
744,309 - +0.1
744,311 - -0.1
744,311 - -0.2
744,311 - -0.6
744,311 - +0.9
744,378 + -0.8
744,386 - MIT1002_00680 0.11 +0.1
744,386 - MIT1002_00680 0.11 +1.0
744,387 + MIT1002_00680 0.11 +0.3
744,407 + MIT1002_00680 0.22 -0.9
744,423 + MIT1002_00680 0.30 +0.3
744,423 + MIT1002_00680 0.30 -0.1
744,431 - MIT1002_00680 0.34 +0.8
744,441 + MIT1002_00680 0.40 +0.7
744,478 + MIT1002_00680 0.59 -0.7
744,539 + -0.6
744,547 - -0.7
744,569 + +0.3
744,749 - MIT1002_00681 0.19 +1.0
744,754 + MIT1002_00681 0.19 -2.2
744,762 - MIT1002_00681 0.20 -1.3
744,836 + MIT1002_00681 0.27 +0.2
744,836 + MIT1002_00681 0.27 -0.2
744,844 - MIT1002_00681 0.28 -0.9
744,845 - MIT1002_00681 0.28 +0.4
744,851 + MIT1002_00681 0.29 -0.4
744,859 - MIT1002_00681 0.29 -0.6
744,888 + MIT1002_00681 0.32 -1.0
744,896 - MIT1002_00681 0.33 +0.1
744,941 - MIT1002_00681 0.37 +0.3

Or see this region's nucleotide sequence