Experiment: monoculture; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00667 and MIT1002_00668 are separated by 112 nucleotides MIT1002_00668 and MIT1002_00669 are separated by 210 nucleotides MIT1002_00669 and MIT1002_00670 are separated by 139 nucleotides
MIT1002_00667: MIT1002_00667 - tetratricopeptide repeat protein, at 729,941 to 732,715
_00667
MIT1002_00668: MIT1002_00668 - Ion transport protein, at 732,828 to 733,682
_00668
MIT1002_00669: MIT1002_00669 - hypothetical protein, at 733,893 to 734,051
_00669
MIT1002_00670: MIT1002_00670 - Outer membrane protein TolC precursor, at 734,191 to 735,564
_00670
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1 at 731.912 kb on - strand, within MIT1002_00667 at 731.945 kb on + strand, within MIT1002_00667 at 731.945 kb on + strand, within MIT1002_00667 at 731.952 kb on - strand, within MIT1002_00667 at 731.977 kb on - strand, within MIT1002_00667 at 731.979 kb on - strand, within MIT1002_00667 at 732.003 kb on + strand, within MIT1002_00667 at 732.011 kb on - strand, within MIT1002_00667 at 732.013 kb on + strand, within MIT1002_00667 at 732.013 kb on + strand, within MIT1002_00667 at 732.013 kb on + strand, within MIT1002_00667 at 732.013 kb on + strand, within MIT1002_00667 at 732.013 kb on + strand, within MIT1002_00667 at 732.013 kb on + strand, within MIT1002_00667 at 732.021 kb on - strand, within MIT1002_00667 at 732.021 kb on - strand, within MIT1002_00667 at 732.036 kb on - strand, within MIT1002_00667 at 732.125 kb on + strand, within MIT1002_00667 at 732.144 kb on - strand, within MIT1002_00667 at 732.267 kb on - strand, within MIT1002_00667 at 732.291 kb on - strand, within MIT1002_00667 at 732.291 kb on - strand, within MIT1002_00667 at 732.291 kb on - strand, within MIT1002_00667 at 732.323 kb on - strand, within MIT1002_00667 at 732.513 kb on - strand at 732.676 kb on + strand at 732.689 kb on - strand at 732.708 kb on + strand at 732.791 kb on - strand at 732.896 kb on - strand at 732.916 kb on - strand, within MIT1002_00668 at 732.922 kb on - strand, within MIT1002_00668 at 732.922 kb on - strand, within MIT1002_00668 at 732.933 kb on - strand, within MIT1002_00668 at 733.086 kb on + strand, within MIT1002_00668 at 733.102 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.282 kb on + strand, within MIT1002_00668 at 733.290 kb on - strand, within MIT1002_00668 at 733.290 kb on - strand, within MIT1002_00668 at 733.379 kb on + strand, within MIT1002_00668 at 733.393 kb on + strand, within MIT1002_00668 at 733.496 kb on - strand, within MIT1002_00668 at 733.498 kb on + strand, within MIT1002_00668 at 733.506 kb on - strand, within MIT1002_00668 at 733.629 kb on - strand at 733.667 kb on + strand at 733.690 kb on - strand at 733.721 kb on + strand at 733.938 kb on + strand, within MIT1002_00669 at 733.941 kb on - strand, within MIT1002_00669 at 733.946 kb on - strand, within MIT1002_00669 at 734.056 kb on + strand at 734.077 kb on + strand at 734.079 kb on + strand at 734.128 kb on + strand at 734.133 kb on + strand at 734.183 kb on + strand at 734.310 kb on - strand at 734.351 kb on - strand, within MIT1002_00670 at 734.353 kb on + strand, within MIT1002_00670 at 734.375 kb on - strand, within MIT1002_00670
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2 remove 731,912 - MIT1002_00667 0.71 +0.3 731,945 + MIT1002_00667 0.72 -0.4 731,945 + MIT1002_00667 0.72 -2.1 731,952 - MIT1002_00667 0.72 -0.1 731,977 - MIT1002_00667 0.73 -0.1 731,979 - MIT1002_00667 0.73 -0.6 732,003 + MIT1002_00667 0.74 -0.0 732,011 - MIT1002_00667 0.75 +0.2 732,013 + MIT1002_00667 0.75 +1.0 732,013 + MIT1002_00667 0.75 +0.3 732,013 + MIT1002_00667 0.75 +1.2 732,013 + MIT1002_00667 0.75 -1.5 732,013 + MIT1002_00667 0.75 -0.8 732,013 + MIT1002_00667 0.75 -0.6 732,021 - MIT1002_00667 0.75 +0.5 732,021 - MIT1002_00667 0.75 +0.6 732,036 - MIT1002_00667 0.75 +0.1 732,125 + MIT1002_00667 0.79 +1.2 732,144 - MIT1002_00667 0.79 -0.7 732,267 - MIT1002_00667 0.84 -0.4 732,291 - MIT1002_00667 0.85 +0.3 732,291 - MIT1002_00667 0.85 +0.6 732,291 - MIT1002_00667 0.85 +0.2 732,323 - MIT1002_00667 0.86 -0.3 732,513 - -0.7 732,676 + -0.7 732,689 - +0.5 732,708 + -0.8 732,791 - +0.0 732,896 - +1.1 732,916 - MIT1002_00668 0.10 -0.4 732,922 - MIT1002_00668 0.11 +0.4 732,922 - MIT1002_00668 0.11 -1.9 732,933 - MIT1002_00668 0.12 +0.4 733,086 + MIT1002_00668 0.30 +1.2 733,102 + MIT1002_00668 0.32 +1.4 733,215 + MIT1002_00668 0.45 +0.5 733,215 + MIT1002_00668 0.45 +0.9 733,215 + MIT1002_00668 0.45 +0.2 733,215 + MIT1002_00668 0.45 -2.4 733,215 + MIT1002_00668 0.45 -1.2 733,223 - MIT1002_00668 0.46 +0.6 733,223 - MIT1002_00668 0.46 -1.3 733,223 - MIT1002_00668 0.46 -0.5 733,223 - MIT1002_00668 0.46 +0.3 733,223 - MIT1002_00668 0.46 +0.4 733,223 - MIT1002_00668 0.46 +0.4 733,282 + MIT1002_00668 0.53 -0.1 733,290 - MIT1002_00668 0.54 +0.6 733,290 - MIT1002_00668 0.54 +0.2 733,379 + MIT1002_00668 0.64 +0.7 733,393 + MIT1002_00668 0.66 +0.3 733,496 - MIT1002_00668 0.78 +1.3 733,498 + MIT1002_00668 0.78 +0.5 733,506 - MIT1002_00668 0.79 -1.3 733,629 - -0.4 733,667 + -2.4 733,690 - -0.4 733,721 + -0.4 733,938 + MIT1002_00669 0.28 +0.0 733,941 - MIT1002_00669 0.30 +1.2 733,946 - MIT1002_00669 0.33 +0.4 734,056 + -0.4 734,077 + +0.3 734,079 + +0.4 734,128 + -1.2 734,133 + -2.2 734,183 + +0.8 734,310 - +0.4 734,351 - MIT1002_00670 0.12 -1.3 734,353 + MIT1002_00670 0.12 +0.1 734,375 - MIT1002_00670 0.13 +0.4
Or see this region's nucleotide sequence