Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00639

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00638 and MIT1002_00639 overlap by 4 nucleotidesMIT1002_00639 and MIT1002_00640 overlap by 11 nucleotides MIT1002_00638: MIT1002_00638 - Outer membrane protein OprM precursor, at 689,619 to 691,061 _00638 MIT1002_00639: MIT1002_00639 - putative efflux pump membrane fusion protein, at 691,058 to 692,536 _00639 MIT1002_00640: MIT1002_00640 - putative efflux pump membrane transporter TtgB, at 692,526 to 695,753 _00640 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 690.232 kb on + strand, within MIT1002_00638at 690.290 kb on + strand, within MIT1002_00638at 690.333 kb on + strand, within MIT1002_00638at 690.360 kb on + strand, within MIT1002_00638at 690.408 kb on + strand, within MIT1002_00638at 690.414 kb on + strand, within MIT1002_00638at 690.414 kb on + strand, within MIT1002_00638at 690.414 kb on + strand, within MIT1002_00638at 690.500 kb on - strand, within MIT1002_00638at 690.609 kb on - strand, within MIT1002_00638at 690.625 kb on + strand, within MIT1002_00638at 690.635 kb on + strand, within MIT1002_00638at 690.635 kb on + strand, within MIT1002_00638at 690.642 kb on - strand, within MIT1002_00638at 690.716 kb on + strand, within MIT1002_00638at 690.759 kb on - strand, within MIT1002_00638at 690.832 kb on + strand, within MIT1002_00638at 690.860 kb on - strand, within MIT1002_00638at 690.963 kb on + strandat 690.963 kb on + strandat 690.985 kb on - strandat 690.995 kb on - strandat 691.000 kb on + strandat 691.032 kb on - strandat 691.036 kb on + strandat 691.036 kb on + strandat 691.042 kb on + strandat 691.050 kb on - strandat 691.050 kb on - strandat 691.052 kb on + strandat 691.071 kb on + strandat 691.132 kb on + strandat 691.268 kb on + strand, within MIT1002_00639at 691.268 kb on + strand, within MIT1002_00639at 691.276 kb on - strand, within MIT1002_00639at 691.289 kb on + strand, within MIT1002_00639at 691.356 kb on - strand, within MIT1002_00639at 691.430 kb on - strand, within MIT1002_00639at 691.437 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.560 kb on + strand, within MIT1002_00639at 691.560 kb on + strand, within MIT1002_00639at 691.560 kb on + strand, within MIT1002_00639at 691.594 kb on - strand, within MIT1002_00639at 691.604 kb on - strand, within MIT1002_00639at 691.619 kb on + strand, within MIT1002_00639at 691.661 kb on - strand, within MIT1002_00639at 691.680 kb on + strand, within MIT1002_00639at 691.687 kb on - strand, within MIT1002_00639at 691.688 kb on - strand, within MIT1002_00639at 691.688 kb on - strand, within MIT1002_00639at 691.695 kb on - strand, within MIT1002_00639at 691.733 kb on - strand, within MIT1002_00639at 691.740 kb on - strand, within MIT1002_00639at 691.750 kb on - strand, within MIT1002_00639at 691.760 kb on - strand, within MIT1002_00639at 691.769 kb on - strand, within MIT1002_00639at 691.830 kb on + strand, within MIT1002_00639at 691.835 kb on + strand, within MIT1002_00639at 691.907 kb on - strand, within MIT1002_00639at 691.942 kb on - strand, within MIT1002_00639at 691.948 kb on - strand, within MIT1002_00639at 691.960 kb on - strand, within MIT1002_00639at 691.960 kb on - strand, within MIT1002_00639at 691.976 kb on + strand, within MIT1002_00639at 692.077 kb on + strand, within MIT1002_00639at 692.085 kb on - strand, within MIT1002_00639at 692.165 kb on - strand, within MIT1002_00639at 692.239 kb on + strand, within MIT1002_00639at 692.267 kb on - strand, within MIT1002_00639at 692.309 kb on + strand, within MIT1002_00639at 692.309 kb on + strand, within MIT1002_00639at 692.317 kb on - strand, within MIT1002_00639at 692.409 kb on + strandat 692.409 kb on + strandat 692.417 kb on - strandat 692.446 kb on - strandat 692.466 kb on + strandat 692.478 kb on + strandat 692.494 kb on - strandat 692.504 kb on + strandat 692.516 kb on + strandat 692.625 kb on + strandat 692.630 kb on + strandat 692.630 kb on + strandat 692.630 kb on + strandat 692.632 kb on + strandat 692.638 kb on - strandat 692.638 kb on - strandat 692.662 kb on + strandat 692.670 kb on - strandat 692.670 kb on - strandat 692.670 kb on - strandat 692.670 kb on - strandat 692.768 kb on + strandat 692.853 kb on - strand, within MIT1002_00640at 692.902 kb on + strand, within MIT1002_00640at 692.910 kb on - strand, within MIT1002_00640at 692.910 kb on - strand, within MIT1002_00640at 692.979 kb on + strand, within MIT1002_00640at 693.010 kb on + strand, within MIT1002_00640at 693.023 kb on + strand, within MIT1002_00640at 693.023 kb on + strand, within MIT1002_00640at 693.279 kb on - strand, within MIT1002_00640at 693.280 kb on + strand, within MIT1002_00640at 693.288 kb on - strand, within MIT1002_00640at 693.288 kb on - strand, within MIT1002_00640at 693.290 kb on + strand, within MIT1002_00640at 693.290 kb on + strand, within MIT1002_00640at 693.290 kb on + strand, within MIT1002_00640at 693.298 kb on + strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.422 kb on - strand, within MIT1002_00640

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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690,232 + MIT1002_00638 0.42 -1.1
690,290 + MIT1002_00638 0.47 -0.4
690,333 + MIT1002_00638 0.49 -0.7
690,360 + MIT1002_00638 0.51 -1.7
690,408 + MIT1002_00638 0.55 +0.1
690,414 + MIT1002_00638 0.55 +0.9
690,414 + MIT1002_00638 0.55 -1.5
690,414 + MIT1002_00638 0.55 -1.9
690,500 - MIT1002_00638 0.61 +0.8
690,609 - MIT1002_00638 0.69 +0.8
690,625 + MIT1002_00638 0.70 -0.8
690,635 + MIT1002_00638 0.70 -0.2
690,635 + MIT1002_00638 0.70 +0.4
690,642 - MIT1002_00638 0.71 -0.5
690,716 + MIT1002_00638 0.76 +0.3
690,759 - MIT1002_00638 0.79 +0.4
690,832 + MIT1002_00638 0.84 -0.1
690,860 - MIT1002_00638 0.86 +0.0
690,963 + +2.5
690,963 + +0.4
690,985 - +0.2
690,995 - -2.4
691,000 + +0.7
691,032 - +1.4
691,036 + -0.2
691,036 + -0.1
691,042 + -1.5
691,050 - +0.5
691,050 - -2.6
691,052 + -0.2
691,071 + -2.4
691,132 + +0.1
691,268 + MIT1002_00639 0.14 +0.7
691,268 + MIT1002_00639 0.14 -0.1
691,276 - MIT1002_00639 0.15 -0.9
691,289 + MIT1002_00639 0.16 -0.7
691,356 - MIT1002_00639 0.20 +1.0
691,430 - MIT1002_00639 0.25 -0.7
691,437 - MIT1002_00639 0.26 -0.1
691,491 - MIT1002_00639 0.29 +0.4
691,491 - MIT1002_00639 0.29 +2.2
691,491 - MIT1002_00639 0.29 +0.1
691,491 - MIT1002_00639 0.29 +0.1
691,560 + MIT1002_00639 0.34 +0.6
691,560 + MIT1002_00639 0.34 -0.2
691,560 + MIT1002_00639 0.34 +1.0
691,594 - MIT1002_00639 0.36 +0.4
691,604 - MIT1002_00639 0.37 -0.8
691,619 + MIT1002_00639 0.38 +0.9
691,661 - MIT1002_00639 0.41 +0.6
691,680 + MIT1002_00639 0.42 -0.5
691,687 - MIT1002_00639 0.43 -0.3
691,688 - MIT1002_00639 0.43 -2.1
691,688 - MIT1002_00639 0.43 -0.9
691,695 - MIT1002_00639 0.43 +0.7
691,733 - MIT1002_00639 0.46 +0.8
691,740 - MIT1002_00639 0.46 +0.5
691,750 - MIT1002_00639 0.47 -0.4
691,760 - MIT1002_00639 0.47 -0.3
691,769 - MIT1002_00639 0.48 -0.0
691,830 + MIT1002_00639 0.52 +1.6
691,835 + MIT1002_00639 0.53 -0.3
691,907 - MIT1002_00639 0.57 +0.5
691,942 - MIT1002_00639 0.60 +0.6
691,948 - MIT1002_00639 0.60 +0.2
691,960 - MIT1002_00639 0.61 -1.5
691,960 - MIT1002_00639 0.61 +1.3
691,976 + MIT1002_00639 0.62 -1.5
692,077 + MIT1002_00639 0.69 +1.0
692,085 - MIT1002_00639 0.69 +0.4
692,165 - MIT1002_00639 0.75 +0.3
692,239 + MIT1002_00639 0.80 +0.8
692,267 - MIT1002_00639 0.82 +0.7
692,309 + MIT1002_00639 0.85 +2.2
692,309 + MIT1002_00639 0.85 -0.3
692,317 - MIT1002_00639 0.85 -1.1
692,409 + -0.0
692,409 + +2.3
692,417 - +1.7
692,446 - -0.4
692,466 + +0.3
692,478 + +0.4
692,494 - -0.6
692,504 + +0.1
692,516 + +1.5
692,625 + +0.5
692,630 + -0.2
692,630 + +0.5
692,630 + +1.2
692,632 + -0.7
692,638 - +1.2
692,638 - +0.0
692,662 + +0.6
692,670 - +0.1
692,670 - -1.6
692,670 - -0.1
692,670 - +0.0
692,768 + -0.5
692,853 - MIT1002_00640 0.10 -0.2
692,902 + MIT1002_00640 0.12 +0.2
692,910 - MIT1002_00640 0.12 +2.2
692,910 - MIT1002_00640 0.12 -0.9
692,979 + MIT1002_00640 0.14 -0.2
693,010 + MIT1002_00640 0.15 -0.8
693,023 + MIT1002_00640 0.15 +1.0
693,023 + MIT1002_00640 0.15 -0.0
693,279 - MIT1002_00640 0.23 -0.4
693,280 + MIT1002_00640 0.23 -1.5
693,288 - MIT1002_00640 0.24 +1.8
693,288 - MIT1002_00640 0.24 -1.7
693,290 + MIT1002_00640 0.24 +0.4
693,290 + MIT1002_00640 0.24 +0.3
693,290 + MIT1002_00640 0.24 +0.2
693,298 + MIT1002_00640 0.24 +0.2
693,298 - MIT1002_00640 0.24 +0.1
693,298 - MIT1002_00640 0.24 -3.2
693,298 - MIT1002_00640 0.24 +0.4
693,298 - MIT1002_00640 0.24 -0.9
693,298 - MIT1002_00640 0.24 -0.2
693,422 - MIT1002_00640 0.28 -0.6

Or see this region's nucleotide sequence