Experiment: monoculture; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00587 and MIT1002_00588 are separated by 11 nucleotides MIT1002_00588 and MIT1002_00589 overlap by 4 nucleotides MIT1002_00589 and MIT1002_00590 are separated by 82 nucleotides MIT1002_00590 and MIT1002_00591 overlap by 4 nucleotides
MIT1002_00587: MIT1002_00587 - hypothetical protein, at 634,732 to 635,598
_00587
MIT1002_00588: MIT1002_00588 - hypothetical protein, at 635,610 to 635,894
_00588
MIT1002_00589: MIT1002_00589 - hypothetical protein, at 635,891 to 636,463
_00589
MIT1002_00590: MIT1002_00590 - Type I restriction enzyme EcoKI M protein, at 636,546 to 638,126
_00590
MIT1002_00591: MIT1002_00591 - Type I restriction enzyme specificity protein MPN_089, at 638,123 to 639,379
_00591
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 635.548 kb on + strand at 635.556 kb on - strand at 635.565 kb on + strand at 635.585 kb on + strand at 635.585 kb on + strand at 635.601 kb on - strand at 635.641 kb on - strand, within MIT1002_00588 at 635.722 kb on + strand, within MIT1002_00588 at 635.808 kb on + strand, within MIT1002_00588 at 635.883 kb on + strand at 635.899 kb on + strand at 635.922 kb on - strand at 635.929 kb on + strand at 635.937 kb on - strand at 635.953 kb on - strand, within MIT1002_00589 at 635.966 kb on + strand, within MIT1002_00589 at 635.974 kb on - strand, within MIT1002_00589 at 636.031 kb on + strand, within MIT1002_00589 at 636.078 kb on - strand, within MIT1002_00589 at 636.172 kb on + strand, within MIT1002_00589 at 636.233 kb on + strand, within MIT1002_00589 at 636.233 kb on + strand, within MIT1002_00589 at 636.233 kb on + strand, within MIT1002_00589 at 636.246 kb on - strand, within MIT1002_00589 at 636.317 kb on + strand, within MIT1002_00589 at 636.325 kb on - strand, within MIT1002_00589 at 636.332 kb on + strand, within MIT1002_00589 at 636.332 kb on + strand, within MIT1002_00589 at 636.340 kb on - strand, within MIT1002_00589 at 636.354 kb on - strand, within MIT1002_00589 at 636.378 kb on - strand, within MIT1002_00589 at 636.484 kb on + strand at 636.553 kb on + strand at 636.581 kb on - strand at 636.614 kb on - strand at 636.614 kb on - strand at 636.659 kb on + strand at 636.760 kb on - strand, within MIT1002_00590 at 636.971 kb on + strand, within MIT1002_00590 at 636.971 kb on + strand, within MIT1002_00590 at 636.971 kb on + strand, within MIT1002_00590 at 636.979 kb on - strand, within MIT1002_00590 at 636.979 kb on - strand, within MIT1002_00590 at 637.021 kb on + strand, within MIT1002_00590 at 637.029 kb on + strand, within MIT1002_00590 at 637.154 kb on - strand, within MIT1002_00590 at 637.325 kb on - strand, within MIT1002_00590 at 637.325 kb on - strand, within MIT1002_00590 at 637.386 kb on + strand, within MIT1002_00590 at 637.387 kb on + strand, within MIT1002_00590 at 637.394 kb on - strand, within MIT1002_00590 at 637.515 kb on - strand, within MIT1002_00590 at 637.521 kb on + strand, within MIT1002_00590 at 637.521 kb on + strand, within MIT1002_00590 at 637.548 kb on + strand, within MIT1002_00590 at 637.671 kb on - strand, within MIT1002_00590 at 637.774 kb on + strand, within MIT1002_00590 at 637.782 kb on - strand, within MIT1002_00590 at 637.963 kb on + strand, within MIT1002_00590 at 638.008 kb on - strand at 638.015 kb on + strand at 638.099 kb on + strand at 638.099 kb on + strand at 638.099 kb on + strand at 638.155 kb on + strand at 638.160 kb on + strand at 638.168 kb on - strand at 638.169 kb on - strand at 638.169 kb on - strand at 638.224 kb on + strand at 638.341 kb on - strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.556 kb on + strand, within MIT1002_00591 at 638.645 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.755 kb on + strand, within MIT1002_00591 at 638.755 kb on + strand, within MIT1002_00591 at 638.780 kb on + strand, within MIT1002_00591 at 638.882 kb on - strand, within MIT1002_00591 at 638.904 kb on - strand, within MIT1002_00591 at 638.988 kb on - strand, within MIT1002_00591 at 638.988 kb on - strand, within MIT1002_00591 at 639.027 kb on + strand, within MIT1002_00591 at 639.040 kb on - strand, within MIT1002_00591 at 639.062 kb on - strand, within MIT1002_00591 at 639.062 kb on - strand, within MIT1002_00591
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2 remove 635,548 + +0.3 635,556 - +1.1 635,565 + +0.1 635,585 + +0.1 635,585 + +1.0 635,601 - -0.6 635,641 - MIT1002_00588 0.11 -1.1 635,722 + MIT1002_00588 0.39 -1.1 635,808 + MIT1002_00588 0.69 -0.3 635,883 + +1.8 635,899 + -0.2 635,922 - -0.8 635,929 + +0.2 635,937 - -0.4 635,953 - MIT1002_00589 0.11 +1.3 635,966 + MIT1002_00589 0.13 +0.1 635,974 - MIT1002_00589 0.14 +0.7 636,031 + MIT1002_00589 0.24 -0.1 636,078 - MIT1002_00589 0.33 -0.6 636,172 + MIT1002_00589 0.49 -0.6 636,233 + MIT1002_00589 0.60 -0.8 636,233 + MIT1002_00589 0.60 +0.2 636,233 + MIT1002_00589 0.60 +0.6 636,246 - MIT1002_00589 0.62 -0.7 636,317 + MIT1002_00589 0.74 +0.4 636,325 - MIT1002_00589 0.76 +0.4 636,332 + MIT1002_00589 0.77 -1.2 636,332 + MIT1002_00589 0.77 -1.5 636,340 - MIT1002_00589 0.78 -0.1 636,354 - MIT1002_00589 0.81 -0.9 636,378 - MIT1002_00589 0.85 +0.7 636,484 + -1.1 636,553 + +0.0 636,581 - +0.1 636,614 - +0.1 636,614 - +0.1 636,659 + -0.8 636,760 - MIT1002_00590 0.14 +0.4 636,971 + MIT1002_00590 0.27 +0.7 636,971 + MIT1002_00590 0.27 -1.9 636,971 + MIT1002_00590 0.27 +1.2 636,979 - MIT1002_00590 0.27 +0.9 636,979 - MIT1002_00590 0.27 +1.9 637,021 + MIT1002_00590 0.30 -1.6 637,029 + MIT1002_00590 0.31 -0.8 637,154 - MIT1002_00590 0.38 -0.5 637,325 - MIT1002_00590 0.49 +0.7 637,325 - MIT1002_00590 0.49 +1.2 637,386 + MIT1002_00590 0.53 +1.8 637,387 + MIT1002_00590 0.53 -0.4 637,394 - MIT1002_00590 0.54 -2.6 637,515 - MIT1002_00590 0.61 +0.7 637,521 + MIT1002_00590 0.62 -0.3 637,521 + MIT1002_00590 0.62 +0.7 637,548 + MIT1002_00590 0.63 +0.4 637,671 - MIT1002_00590 0.71 -0.8 637,774 + MIT1002_00590 0.78 +0.6 637,782 - MIT1002_00590 0.78 +0.2 637,963 + MIT1002_00590 0.90 -0.6 638,008 - +0.4 638,015 + +0.8 638,099 + +1.5 638,099 + -0.0 638,099 + -0.5 638,155 + -1.3 638,160 + -0.5 638,168 - -0.4 638,169 - -0.4 638,169 - -0.5 638,224 + -2.9 638,341 - MIT1002_00591 0.17 +0.1 638,538 + MIT1002_00591 0.33 +0.5 638,538 + MIT1002_00591 0.33 -0.6 638,538 + MIT1002_00591 0.33 +0.7 638,556 + MIT1002_00591 0.34 -0.9 638,645 - MIT1002_00591 0.42 +0.4 638,702 - MIT1002_00591 0.46 -3.2 638,702 - MIT1002_00591 0.46 +1.6 638,702 - MIT1002_00591 0.46 -0.7 638,755 + MIT1002_00591 0.50 -0.2 638,755 + MIT1002_00591 0.50 -0.1 638,780 + MIT1002_00591 0.52 +0.1 638,882 - MIT1002_00591 0.60 -0.3 638,904 - MIT1002_00591 0.62 -1.9 638,988 - MIT1002_00591 0.69 -0.6 638,988 - MIT1002_00591 0.69 -0.1 639,027 + MIT1002_00591 0.72 +0.2 639,040 - MIT1002_00591 0.73 -0.2 639,062 - MIT1002_00591 0.75 +1.2 639,062 - MIT1002_00591 0.75 -0.1
Or see this region's nucleotide sequence