Experiment: monoculture; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00554 and MIT1002_00555 are separated by 76 nucleotides MIT1002_00555 and MIT1002_00556 are separated by 24 nucleotides MIT1002_00556 and MIT1002_00557 are separated by 52 nucleotides MIT1002_00557 and MIT1002_00558 are separated by 5 nucleotides MIT1002_00558 and MIT1002_00559 are separated by 66 nucleotides
MIT1002_00554: MIT1002_00554 - HTH-type transcriptional regulator YofA, at 603,272 to 604,129
_00554
MIT1002_00555: MIT1002_00555 - putative alkylphosphonate utilization operon protein PhnA, at 604,206 to 604,535
_00555
MIT1002_00556: MIT1002_00556 - putative N-acetyltransferase YsnE, at 604,560 to 605,015
_00556
MIT1002_00557: MIT1002_00557 - ribosomal-protein-alanine acetyltransferase, at 605,068 to 605,526
_00557
MIT1002_00558: MIT1002_00558 - hypothetical protein, at 605,532 to 605,864
_00558
MIT1002_00559: MIT1002_00559 - Gram-negative bacterial tonB protein, at 605,931 to 606,365
_00559
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.568 kb on - strand, within MIT1002_00554 at 603.568 kb on - strand, within MIT1002_00554 at 603.614 kb on + strand, within MIT1002_00554 at 603.682 kb on + strand, within MIT1002_00554 at 603.780 kb on - strand, within MIT1002_00554 at 603.804 kb on + strand, within MIT1002_00554 at 603.804 kb on + strand, within MIT1002_00554 at 603.814 kb on + strand, within MIT1002_00554 at 603.868 kb on + strand, within MIT1002_00554 at 603.899 kb on + strand, within MIT1002_00554 at 603.906 kb on - strand, within MIT1002_00554 at 603.907 kb on - strand, within MIT1002_00554 at 603.922 kb on - strand, within MIT1002_00554 at 603.955 kb on - strand, within MIT1002_00554 at 603.960 kb on - strand, within MIT1002_00554 at 603.984 kb on + strand, within MIT1002_00554 at 603.992 kb on - strand, within MIT1002_00554 at 603.997 kb on - strand, within MIT1002_00554 at 604.157 kb on + strand at 604.239 kb on + strand, within MIT1002_00555 at 604.258 kb on + strand, within MIT1002_00555 at 604.302 kb on + strand, within MIT1002_00555 at 604.415 kb on - strand, within MIT1002_00555 at 604.427 kb on + strand, within MIT1002_00555 at 604.435 kb on - strand, within MIT1002_00555 at 604.453 kb on + strand, within MIT1002_00555 at 604.625 kb on + strand, within MIT1002_00556 at 604.708 kb on - strand, within MIT1002_00556 at 604.765 kb on + strand, within MIT1002_00556 at 604.765 kb on + strand, within MIT1002_00556 at 604.766 kb on - strand, within MIT1002_00556 at 604.773 kb on - strand, within MIT1002_00556 at 604.773 kb on - strand, within MIT1002_00556 at 604.773 kb on - strand, within MIT1002_00556 at 604.814 kb on + strand, within MIT1002_00556 at 604.923 kb on + strand, within MIT1002_00556 at 605.018 kb on + strand at 605.018 kb on + strand at 605.025 kb on + strand at 605.036 kb on + strand at 605.036 kb on + strand at 605.039 kb on - strand at 605.072 kb on - strand at 605.082 kb on - strand at 605.082 kb on - strand at 605.082 kb on - strand at 605.088 kb on - strand at 605.180 kb on - strand, within MIT1002_00557 at 605.192 kb on + strand, within MIT1002_00557 at 605.192 kb on + strand, within MIT1002_00557 at 605.205 kb on + strand, within MIT1002_00557 at 605.239 kb on + strand, within MIT1002_00557 at 605.239 kb on + strand, within MIT1002_00557 at 605.239 kb on + strand, within MIT1002_00557 at 605.242 kb on - strand, within MIT1002_00557 at 605.246 kb on + strand, within MIT1002_00557 at 605.246 kb on + strand, within MIT1002_00557 at 605.246 kb on + strand, within MIT1002_00557 at 605.246 kb on + strand, within MIT1002_00557 at 605.246 kb on + strand, within MIT1002_00557 at 605.247 kb on - strand, within MIT1002_00557 at 605.247 kb on - strand, within MIT1002_00557 at 605.254 kb on - strand, within MIT1002_00557 at 605.254 kb on - strand, within MIT1002_00557 at 605.261 kb on - strand, within MIT1002_00557 at 605.263 kb on + strand, within MIT1002_00557 at 605.271 kb on + strand, within MIT1002_00557 at 605.271 kb on - strand, within MIT1002_00557 at 605.279 kb on - strand, within MIT1002_00557 at 605.286 kb on + strand, within MIT1002_00557 at 605.288 kb on + strand, within MIT1002_00557 at 605.294 kb on - strand, within MIT1002_00557 at 605.296 kb on - strand, within MIT1002_00557 at 605.346 kb on - strand, within MIT1002_00557 at 605.364 kb on + strand, within MIT1002_00557 at 605.413 kb on - strand, within MIT1002_00557 at 605.428 kb on - strand, within MIT1002_00557 at 605.704 kb on + strand, within MIT1002_00558 at 605.718 kb on - strand, within MIT1002_00558 at 605.772 kb on - strand, within MIT1002_00558 at 605.794 kb on - strand, within MIT1002_00558 at 605.833 kb on - strand at 605.866 kb on + strand at 605.874 kb on - strand at 605.981 kb on + strand, within MIT1002_00559
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2 remove 603,568 - MIT1002_00554 0.34 +1.1 603,568 - MIT1002_00554 0.34 +0.8 603,614 + MIT1002_00554 0.40 -0.6 603,682 + MIT1002_00554 0.48 -0.4 603,780 - MIT1002_00554 0.59 +0.7 603,804 + MIT1002_00554 0.62 -0.3 603,804 + MIT1002_00554 0.62 -0.2 603,814 + MIT1002_00554 0.63 +0.2 603,868 + MIT1002_00554 0.69 -2.3 603,899 + MIT1002_00554 0.73 -1.0 603,906 - MIT1002_00554 0.74 -0.6 603,907 - MIT1002_00554 0.74 +0.2 603,922 - MIT1002_00554 0.76 +0.3 603,955 - MIT1002_00554 0.80 +1.0 603,960 - MIT1002_00554 0.80 +1.9 603,984 + MIT1002_00554 0.83 -0.9 603,992 - MIT1002_00554 0.84 +1.0 603,997 - MIT1002_00554 0.84 -0.5 604,157 + +0.1 604,239 + MIT1002_00555 0.10 -1.1 604,258 + MIT1002_00555 0.16 -0.8 604,302 + MIT1002_00555 0.29 -1.9 604,415 - MIT1002_00555 0.63 +1.7 604,427 + MIT1002_00555 0.67 -0.0 604,435 - MIT1002_00555 0.69 -1.9 604,453 + MIT1002_00555 0.75 +1.2 604,625 + MIT1002_00556 0.14 +0.6 604,708 - MIT1002_00556 0.32 +0.2 604,765 + MIT1002_00556 0.45 -0.6 604,765 + MIT1002_00556 0.45 -1.1 604,766 - MIT1002_00556 0.45 -1.1 604,773 - MIT1002_00556 0.47 -0.1 604,773 - MIT1002_00556 0.47 +0.2 604,773 - MIT1002_00556 0.47 +2.4 604,814 + MIT1002_00556 0.56 +0.0 604,923 + MIT1002_00556 0.80 +0.2 605,018 + -2.7 605,018 + -0.1 605,025 + -0.2 605,036 + +0.9 605,036 + +1.0 605,039 - -0.6 605,072 - +0.7 605,082 - +0.3 605,082 - -0.1 605,082 - +0.4 605,088 - +0.5 605,180 - MIT1002_00557 0.24 +0.1 605,192 + MIT1002_00557 0.27 +0.0 605,192 + MIT1002_00557 0.27 -0.2 605,205 + MIT1002_00557 0.30 -0.2 605,239 + MIT1002_00557 0.37 +1.3 605,239 + MIT1002_00557 0.37 -0.7 605,239 + MIT1002_00557 0.37 +0.8 605,242 - MIT1002_00557 0.38 -0.4 605,246 + MIT1002_00557 0.39 -0.6 605,246 + MIT1002_00557 0.39 -1.0 605,246 + MIT1002_00557 0.39 +0.7 605,246 + MIT1002_00557 0.39 -0.8 605,246 + MIT1002_00557 0.39 -1.1 605,247 - MIT1002_00557 0.39 +0.1 605,247 - MIT1002_00557 0.39 -0.8 605,254 - MIT1002_00557 0.41 +0.2 605,254 - MIT1002_00557 0.41 -1.1 605,261 - MIT1002_00557 0.42 +0.9 605,263 + MIT1002_00557 0.42 +0.4 605,271 + MIT1002_00557 0.44 -1.2 605,271 - MIT1002_00557 0.44 -0.0 605,279 - MIT1002_00557 0.46 -2.3 605,286 + MIT1002_00557 0.47 -1.7 605,288 + MIT1002_00557 0.48 +0.9 605,294 - MIT1002_00557 0.49 -0.3 605,296 - MIT1002_00557 0.50 -0.6 605,346 - MIT1002_00557 0.61 +0.7 605,364 + MIT1002_00557 0.64 -0.5 605,413 - MIT1002_00557 0.75 -0.2 605,428 - MIT1002_00557 0.78 -0.7 605,704 + MIT1002_00558 0.52 +0.4 605,718 - MIT1002_00558 0.56 -0.8 605,772 - MIT1002_00558 0.72 -0.1 605,794 - MIT1002_00558 0.79 +0.0 605,833 - +0.5 605,866 + +0.2 605,874 - +0.3 605,981 + MIT1002_00559 0.11 +1.0
Or see this region's nucleotide sequence