Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00527

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00526 and MIT1002_00527 are separated by 200 nucleotidesMIT1002_00527 and MIT1002_00528 are separated by 283 nucleotidesMIT1002_00528 and MIT1002_00529 are separated by 287 nucleotides MIT1002_00526: MIT1002_00526 - Soluble aldose sugar dehydrogenase YliI precursor, at 571,511 to 572,692 _00526 MIT1002_00527: MIT1002_00527 - Prolyl tripeptidyl peptidase precursor, at 572,893 to 575,001 _00527 MIT1002_00528: MIT1002_00528 - putative membrane protein, at 575,285 to 575,617 _00528 MIT1002_00529: MIT1002_00529 - Thioredoxin, at 575,905 to 576,774 _00529 Position (kb) 572 573 574 575 576Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 571.894 kb on - strand, within MIT1002_00526at 571.952 kb on - strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.962 kb on - strand, within MIT1002_00526at 572.069 kb on + strand, within MIT1002_00526at 572.079 kb on - strand, within MIT1002_00526at 572.111 kb on + strand, within MIT1002_00526at 572.169 kb on - strand, within MIT1002_00526at 572.171 kb on + strand, within MIT1002_00526at 572.171 kb on + strand, within MIT1002_00526at 572.179 kb on - strand, within MIT1002_00526at 572.194 kb on + strand, within MIT1002_00526at 572.234 kb on + strand, within MIT1002_00526at 572.242 kb on - strand, within MIT1002_00526at 572.343 kb on + strand, within MIT1002_00526at 572.346 kb on - strand, within MIT1002_00526at 572.353 kb on + strand, within MIT1002_00526at 572.361 kb on + strand, within MIT1002_00526at 572.371 kb on - strand, within MIT1002_00526at 572.457 kb on + strand, within MIT1002_00526at 572.457 kb on + strand, within MIT1002_00526at 572.465 kb on - strand, within MIT1002_00526at 572.499 kb on + strand, within MIT1002_00526at 572.504 kb on + strand, within MIT1002_00526at 572.504 kb on + strand, within MIT1002_00526at 572.573 kb on - strand, within MIT1002_00526at 572.575 kb on + strandat 572.583 kb on - strandat 572.652 kb on + strandat 572.652 kb on + strandat 572.660 kb on - strandat 572.680 kb on - strandat 572.697 kb on + strandat 572.720 kb on - strandat 572.802 kb on - strandat 572.884 kb on + strandat 572.940 kb on - strandat 573.044 kb on + strandat 573.052 kb on - strandat 573.097 kb on + strandat 573.099 kb on + strandat 573.111 kb on + strand, within MIT1002_00527at 573.133 kb on + strand, within MIT1002_00527at 573.133 kb on + strand, within MIT1002_00527at 573.133 kb on + strand, within MIT1002_00527at 573.140 kb on + strand, within MIT1002_00527at 573.141 kb on - strand, within MIT1002_00527at 573.141 kb on - strand, within MIT1002_00527at 573.173 kb on - strand, within MIT1002_00527at 573.267 kb on - strand, within MIT1002_00527at 573.267 kb on - strand, within MIT1002_00527at 573.306 kb on + strand, within MIT1002_00527at 573.312 kb on + strand, within MIT1002_00527at 573.312 kb on + strand, within MIT1002_00527at 573.312 kb on + strand, within MIT1002_00527at 573.362 kb on - strand, within MIT1002_00527at 573.411 kb on - strand, within MIT1002_00527at 573.471 kb on + strand, within MIT1002_00527at 573.476 kb on + strand, within MIT1002_00527at 573.484 kb on - strand, within MIT1002_00527at 573.492 kb on + strand, within MIT1002_00527at 573.502 kb on - strand, within MIT1002_00527at 573.542 kb on - strand, within MIT1002_00527at 573.609 kb on - strand, within MIT1002_00527at 573.618 kb on + strand, within MIT1002_00527at 573.621 kb on - strand, within MIT1002_00527at 573.653 kb on - strand, within MIT1002_00527at 573.702 kb on + strand, within MIT1002_00527at 573.702 kb on + strand, within MIT1002_00527at 573.712 kb on + strand, within MIT1002_00527at 573.736 kb on + strand, within MIT1002_00527at 573.736 kb on + strand, within MIT1002_00527at 573.744 kb on - strand, within MIT1002_00527at 573.766 kb on + strand, within MIT1002_00527at 573.771 kb on + strand, within MIT1002_00527at 573.779 kb on - strand, within MIT1002_00527at 573.790 kb on + strand, within MIT1002_00527at 573.798 kb on - strand, within MIT1002_00527at 573.808 kb on - strand, within MIT1002_00527at 573.836 kb on + strand, within MIT1002_00527at 573.836 kb on + strand, within MIT1002_00527at 573.836 kb on + strand, within MIT1002_00527at 573.844 kb on - strand, within MIT1002_00527at 573.844 kb on - strand, within MIT1002_00527at 573.844 kb on - strand, within MIT1002_00527at 573.951 kb on + strand, within MIT1002_00527at 573.997 kb on - strand, within MIT1002_00527at 574.002 kb on - strand, within MIT1002_00527at 574.044 kb on + strand, within MIT1002_00527at 574.097 kb on - strand, within MIT1002_00527at 574.133 kb on + strand, within MIT1002_00527at 574.140 kb on - strand, within MIT1002_00527at 574.210 kb on + strand, within MIT1002_00527at 574.234 kb on + strand, within MIT1002_00527at 574.283 kb on - strand, within MIT1002_00527at 574.338 kb on - strand, within MIT1002_00527at 574.364 kb on - strand, within MIT1002_00527at 574.372 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.391 kb on + strand, within MIT1002_00527at 574.396 kb on + strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.399 kb on - strand, within MIT1002_00527at 574.404 kb on - strand, within MIT1002_00527at 574.433 kb on - strand, within MIT1002_00527at 574.438 kb on - strand, within MIT1002_00527at 574.442 kb on + strand, within MIT1002_00527at 574.442 kb on + strand, within MIT1002_00527at 574.448 kb on + strand, within MIT1002_00527at 574.501 kb on + strand, within MIT1002_00527at 574.507 kb on + strand, within MIT1002_00527at 574.515 kb on - strand, within MIT1002_00527at 574.524 kb on + strand, within MIT1002_00527at 574.548 kb on + strand, within MIT1002_00527at 574.689 kb on - strand, within MIT1002_00527at 574.782 kb on - strand, within MIT1002_00527at 574.871 kb on - strandat 574.901 kb on + strandat 574.901 kb on + strandat 574.906 kb on + strandat 574.909 kb on - strandat 574.955 kb on - strandat 575.041 kb on - strandat 575.041 kb on - strandat 575.058 kb on + strandat 575.060 kb on + strandat 575.066 kb on - strandat 575.117 kb on - strandat 575.213 kb on - strandat 575.263 kb on - strandat 575.266 kb on + strandat 575.275 kb on - strandat 575.276 kb on + strandat 575.337 kb on - strand, within MIT1002_00528at 575.450 kb on - strand, within MIT1002_00528at 575.452 kb on - strand, within MIT1002_00528at 575.452 kb on - strand, within MIT1002_00528at 575.463 kb on + strand, within MIT1002_00528at 575.494 kb on + strand, within MIT1002_00528at 575.508 kb on - strand, within MIT1002_00528at 575.614 kb on + strandat 575.615 kb on + strandat 575.622 kb on - strandat 575.623 kb on - strandat 575.636 kb on + strandat 575.675 kb on + strandat 575.683 kb on - strandat 575.751 kb on + strandat 575.761 kb on - strandat 575.835 kb on + strandat 575.835 kb on + strandat 575.858 kb on + strandat 575.895 kb on + strandat 575.895 kb on + strandat 575.975 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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571,894 - MIT1002_00526 0.32 -1.1
571,952 - MIT1002_00526 0.37 +0.1
571,954 + MIT1002_00526 0.37 -0.9
571,954 + MIT1002_00526 0.37 -0.5
571,954 + MIT1002_00526 0.37 -1.2
571,954 + MIT1002_00526 0.37 -0.3
571,954 + MIT1002_00526 0.37 +0.4
571,962 - MIT1002_00526 0.38 +0.2
572,069 + MIT1002_00526 0.47 -2.2
572,079 - MIT1002_00526 0.48 +0.5
572,111 + MIT1002_00526 0.51 +0.4
572,169 - MIT1002_00526 0.56 -1.4
572,171 + MIT1002_00526 0.56 -0.4
572,171 + MIT1002_00526 0.56 -3.5
572,179 - MIT1002_00526 0.57 -2.1
572,194 + MIT1002_00526 0.58 -0.5
572,234 + MIT1002_00526 0.61 -0.1
572,242 - MIT1002_00526 0.62 +0.1
572,343 + MIT1002_00526 0.70 -1.7
572,346 - MIT1002_00526 0.71 -1.1
572,353 + MIT1002_00526 0.71 -0.3
572,361 + MIT1002_00526 0.72 +0.2
572,371 - MIT1002_00526 0.73 +1.0
572,457 + MIT1002_00526 0.80 +0.1
572,457 + MIT1002_00526 0.80 -0.1
572,465 - MIT1002_00526 0.81 +2.4
572,499 + MIT1002_00526 0.84 -0.6
572,504 + MIT1002_00526 0.84 +0.2
572,504 + MIT1002_00526 0.84 +0.5
572,573 - MIT1002_00526 0.90 -2.0
572,575 + +1.6
572,583 - -0.3
572,652 + +0.1
572,652 + +1.5
572,660 - +0.6
572,680 - -0.1
572,697 + -1.0
572,720 - +0.7
572,802 - -1.6
572,884 + -0.2
572,940 - +0.8
573,044 + +0.2
573,052 - -1.0
573,097 + +0.1
573,099 + +0.0
573,111 + MIT1002_00527 0.10 -0.3
573,133 + MIT1002_00527 0.11 -0.6
573,133 + MIT1002_00527 0.11 +0.9
573,133 + MIT1002_00527 0.11 +2.4
573,140 + MIT1002_00527 0.12 +0.4
573,141 - MIT1002_00527 0.12 +0.0
573,141 - MIT1002_00527 0.12 +1.8
573,173 - MIT1002_00527 0.13 -0.2
573,267 - MIT1002_00527 0.18 +0.2
573,267 - MIT1002_00527 0.18 +0.4
573,306 + MIT1002_00527 0.20 -0.4
573,312 + MIT1002_00527 0.20 +1.5
573,312 + MIT1002_00527 0.20 +0.3
573,312 + MIT1002_00527 0.20 -1.6
573,362 - MIT1002_00527 0.22 -0.0
573,411 - MIT1002_00527 0.25 +0.1
573,471 + MIT1002_00527 0.27 +0.5
573,476 + MIT1002_00527 0.28 -0.1
573,484 - MIT1002_00527 0.28 -1.6
573,492 + MIT1002_00527 0.28 -1.4
573,502 - MIT1002_00527 0.29 +0.1
573,542 - MIT1002_00527 0.31 +1.8
573,609 - MIT1002_00527 0.34 +0.7
573,618 + MIT1002_00527 0.34 +0.3
573,621 - MIT1002_00527 0.35 +0.8
573,653 - MIT1002_00527 0.36 -0.2
573,702 + MIT1002_00527 0.38 +0.7
573,702 + MIT1002_00527 0.38 +0.7
573,712 + MIT1002_00527 0.39 +1.2
573,736 + MIT1002_00527 0.40 -2.3
573,736 + MIT1002_00527 0.40 -0.6
573,744 - MIT1002_00527 0.40 -3.3
573,766 + MIT1002_00527 0.41 -0.6
573,771 + MIT1002_00527 0.42 -1.0
573,779 - MIT1002_00527 0.42 -3.1
573,790 + MIT1002_00527 0.43 +0.5
573,798 - MIT1002_00527 0.43 +0.1
573,808 - MIT1002_00527 0.43 -0.9
573,836 + MIT1002_00527 0.45 -1.6
573,836 + MIT1002_00527 0.45 +0.2
573,836 + MIT1002_00527 0.45 -0.0
573,844 - MIT1002_00527 0.45 +0.7
573,844 - MIT1002_00527 0.45 -0.9
573,844 - MIT1002_00527 0.45 -0.0
573,951 + MIT1002_00527 0.50 +1.0
573,997 - MIT1002_00527 0.52 -0.7
574,002 - MIT1002_00527 0.53 -0.0
574,044 + MIT1002_00527 0.55 +0.2
574,097 - MIT1002_00527 0.57 +0.3
574,133 + MIT1002_00527 0.59 +0.5
574,140 - MIT1002_00527 0.59 +0.8
574,210 + MIT1002_00527 0.62 -0.2
574,234 + MIT1002_00527 0.64 +0.5
574,283 - MIT1002_00527 0.66 +0.3
574,338 - MIT1002_00527 0.69 -2.4
574,364 - MIT1002_00527 0.70 +1.7
574,372 + MIT1002_00527 0.70 -1.8
574,391 + MIT1002_00527 0.71 +0.2
574,391 + MIT1002_00527 0.71 +1.4
574,391 + MIT1002_00527 0.71 -0.6
574,391 + MIT1002_00527 0.71 -0.1
574,391 + MIT1002_00527 0.71 +0.7
574,391 + MIT1002_00527 0.71 +0.1
574,391 + MIT1002_00527 0.71 -0.4
574,391 + MIT1002_00527 0.71 +0.1
574,391 + MIT1002_00527 0.71 -1.0
574,391 + MIT1002_00527 0.71 +0.5
574,396 + MIT1002_00527 0.71 -0.5
574,399 - MIT1002_00527 0.71 +0.2
574,399 - MIT1002_00527 0.71 -1.7
574,399 - MIT1002_00527 0.71 -0.2
574,399 - MIT1002_00527 0.71 -0.1
574,399 - MIT1002_00527 0.71 -0.4
574,399 - MIT1002_00527 0.71 -0.0
574,399 - MIT1002_00527 0.71 -0.3
574,399 - MIT1002_00527 0.71 +0.7
574,399 - MIT1002_00527 0.71 +1.0
574,404 - MIT1002_00527 0.72 -0.4
574,433 - MIT1002_00527 0.73 -0.2
574,438 - MIT1002_00527 0.73 -1.7
574,442 + MIT1002_00527 0.73 +0.4
574,442 + MIT1002_00527 0.73 -0.6
574,448 + MIT1002_00527 0.74 +2.8
574,501 + MIT1002_00527 0.76 +0.1
574,507 + MIT1002_00527 0.77 +0.1
574,515 - MIT1002_00527 0.77 -0.7
574,524 + MIT1002_00527 0.77 +0.9
574,548 + MIT1002_00527 0.78 +0.3
574,689 - MIT1002_00527 0.85 -0.5
574,782 - MIT1002_00527 0.90 +1.3
574,871 - -0.3
574,901 + -0.3
574,901 + -0.4
574,906 + +0.1
574,909 - +1.2
574,955 - -0.2
575,041 - +0.6
575,041 - -0.4
575,058 + +0.4
575,060 + +0.7
575,066 - -0.3
575,117 - +0.2
575,213 - +0.9
575,263 - -0.1
575,266 + -2.0
575,275 - +0.4
575,276 + +0.3
575,337 - MIT1002_00528 0.16 +0.4
575,450 - MIT1002_00528 0.50 -0.2
575,452 - MIT1002_00528 0.50 +1.2
575,452 - MIT1002_00528 0.50 -0.0
575,463 + MIT1002_00528 0.53 +0.9
575,494 + MIT1002_00528 0.63 -0.0
575,508 - MIT1002_00528 0.67 -0.0
575,614 + -0.4
575,615 + +0.5
575,622 - +1.7
575,623 - -0.3
575,636 + -0.7
575,675 + +0.4
575,683 - +0.2
575,751 + +2.1
575,761 - -2.7
575,835 + +0.1
575,835 + -0.3
575,858 + +0.2
575,895 + +0.8
575,895 + -0.4
575,975 + -0.5

Or see this region's nucleotide sequence