Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00489

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00487 and MIT1002_00488 are separated by 12 nucleotidesMIT1002_00488 and MIT1002_00489 are separated by 253 nucleotidesMIT1002_00489 and MIT1002_00490 are separated by 123 nucleotides MIT1002_00487: MIT1002_00487 - Glutaredoxin-3, at 532,071 to 532,331 _00487 MIT1002_00488: MIT1002_00488 - Thiosulfate sulfurtransferase GlpE, at 532,344 to 532,769 _00488 MIT1002_00489: MIT1002_00489 - Septal ring factor, at 533,023 to 534,186 _00489 MIT1002_00490: MIT1002_00490 - Divergent polysaccharide deacetylase, at 534,310 to 535,215 _00490 Position (kb) 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 532.061 kb on - strandat 532.109 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.324 kb on - strandat 532.369 kb on - strandat 532.369 kb on - strandat 532.461 kb on - strand, within MIT1002_00488at 532.497 kb on + strand, within MIT1002_00488at 532.537 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.570 kb on + strand, within MIT1002_00488at 532.655 kb on - strand, within MIT1002_00488at 532.772 kb on + strandat 532.772 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.773 kb on + strandat 532.780 kb on - strandat 532.781 kb on - strandat 532.781 kb on - strandat 532.781 kb on - strandat 532.781 kb on - strandat 532.801 kb on - strandat 532.803 kb on + strandat 532.850 kb on - strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.922 kb on + strandat 532.930 kb on - strandat 532.944 kb on - strandat 532.981 kb on + strandat 533.063 kb on - strandat 533.063 kb on - strandat 533.104 kb on - strandat 533.112 kb on - strandat 533.162 kb on + strand, within MIT1002_00489at 533.176 kb on + strand, within MIT1002_00489at 533.177 kb on - strand, within MIT1002_00489at 533.195 kb on - strand, within MIT1002_00489at 533.198 kb on + strand, within MIT1002_00489at 533.260 kb on + strand, within MIT1002_00489at 533.265 kb on + strand, within MIT1002_00489at 533.268 kb on - strand, within MIT1002_00489at 533.307 kb on + strand, within MIT1002_00489at 533.379 kb on + strand, within MIT1002_00489at 533.387 kb on - strand, within MIT1002_00489at 533.387 kb on - strand, within MIT1002_00489at 533.404 kb on + strand, within MIT1002_00489at 533.412 kb on - strand, within MIT1002_00489at 533.450 kb on + strand, within MIT1002_00489at 533.450 kb on - strand, within MIT1002_00489at 533.514 kb on + strand, within MIT1002_00489at 533.522 kb on - strand, within MIT1002_00489at 533.549 kb on + strand, within MIT1002_00489at 533.679 kb on - strand, within MIT1002_00489at 533.754 kb on - strand, within MIT1002_00489at 533.831 kb on - strand, within MIT1002_00489at 533.875 kb on + strand, within MIT1002_00489at 533.875 kb on + strand, within MIT1002_00489at 533.883 kb on - strand, within MIT1002_00489at 533.883 kb on - strand, within MIT1002_00489at 533.933 kb on + strand, within MIT1002_00489at 533.958 kb on - strand, within MIT1002_00489at 533.983 kb on - strand, within MIT1002_00489at 533.983 kb on - strand, within MIT1002_00489at 533.983 kb on - strand, within MIT1002_00489at 534.010 kb on + strand, within MIT1002_00489at 534.010 kb on + strand, within MIT1002_00489at 534.010 kb on + strand, within MIT1002_00489at 534.010 kb on + strand, within MIT1002_00489at 534.010 kb on + strand, within MIT1002_00489at 534.018 kb on - strand, within MIT1002_00489at 534.020 kb on - strand, within MIT1002_00489at 534.088 kb on + strandat 534.114 kb on + strandat 534.179 kb on - strandat 534.190 kb on + strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.260 kb on + strandat 534.263 kb on + strandat 534.266 kb on - strandat 534.268 kb on - strandat 534.543 kb on + strand, within MIT1002_00490at 534.548 kb on + strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.551 kb on - strand, within MIT1002_00490at 534.584 kb on + strand, within MIT1002_00490at 534.589 kb on + strand, within MIT1002_00490at 534.592 kb on - strand, within MIT1002_00490at 534.614 kb on - strand, within MIT1002_00490at 534.648 kb on - strand, within MIT1002_00490at 534.648 kb on - strand, within MIT1002_00490at 534.670 kb on - strand, within MIT1002_00490at 534.773 kb on + strand, within MIT1002_00490at 534.791 kb on - strand, within MIT1002_00490at 534.809 kb on + strand, within MIT1002_00490at 534.816 kb on - strand, within MIT1002_00490at 534.822 kb on - strand, within MIT1002_00490at 534.899 kb on - strand, within MIT1002_00490at 534.973 kb on + strand, within MIT1002_00490at 534.998 kb on + strand, within MIT1002_00490at 534.998 kb on + strand, within MIT1002_00490at 535.006 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.011 kb on - strand, within MIT1002_00490at 535.012 kb on - strand, within MIT1002_00490at 535.089 kb on + strand, within MIT1002_00490at 535.102 kb on + strand, within MIT1002_00490at 535.112 kb on + strand, within MIT1002_00490at 535.120 kb on - strand, within MIT1002_00490at 535.145 kb on + strandat 535.156 kb on + strandat 535.156 kb on + strandat 535.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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532,061 - -0.7
532,109 - MIT1002_00487 0.15 -0.6
532,222 - MIT1002_00487 0.58 -0.4
532,222 - MIT1002_00487 0.58 -0.1
532,222 - MIT1002_00487 0.58 +0.6
532,222 - MIT1002_00487 0.58 -0.3
532,324 - -0.6
532,369 - -0.3
532,369 - +0.1
532,461 - MIT1002_00488 0.27 -1.2
532,497 + MIT1002_00488 0.36 +0.6
532,537 + MIT1002_00488 0.45 +0.7
532,570 + MIT1002_00488 0.53 +0.7
532,570 + MIT1002_00488 0.53 -0.3
532,570 + MIT1002_00488 0.53 -0.4
532,570 + MIT1002_00488 0.53 -1.0
532,655 - MIT1002_00488 0.73 +1.7
532,772 + -2.0
532,772 + -0.6
532,773 + -0.1
532,773 + -0.8
532,773 + -0.4
532,773 + +0.4
532,773 + +0.6
532,780 - +0.2
532,781 - +1.3
532,781 - -3.0
532,781 - -0.9
532,781 - +0.6
532,801 - -1.0
532,803 + -0.0
532,850 - +0.4
532,922 + +0.8
532,922 + +0.9
532,922 + +1.7
532,922 + +1.6
532,922 + -0.4
532,930 - -0.4
532,944 - -1.0
532,981 + +1.7
533,063 - -0.2
533,063 - +1.2
533,104 - +0.6
533,112 - -0.5
533,162 + MIT1002_00489 0.12 -1.1
533,176 + MIT1002_00489 0.13 -1.1
533,177 - MIT1002_00489 0.13 +0.5
533,195 - MIT1002_00489 0.15 -1.1
533,198 + MIT1002_00489 0.15 -1.0
533,260 + MIT1002_00489 0.20 +0.5
533,265 + MIT1002_00489 0.21 -0.3
533,268 - MIT1002_00489 0.21 +0.1
533,307 + MIT1002_00489 0.24 -1.2
533,379 + MIT1002_00489 0.31 -1.9
533,387 - MIT1002_00489 0.31 -0.1
533,387 - MIT1002_00489 0.31 +0.5
533,404 + MIT1002_00489 0.33 +1.1
533,412 - MIT1002_00489 0.33 -0.7
533,450 + MIT1002_00489 0.37 -0.7
533,450 - MIT1002_00489 0.37 -0.6
533,514 + MIT1002_00489 0.42 -0.1
533,522 - MIT1002_00489 0.43 -0.2
533,549 + MIT1002_00489 0.45 -0.3
533,679 - MIT1002_00489 0.56 -0.3
533,754 - MIT1002_00489 0.63 -1.0
533,831 - MIT1002_00489 0.69 -0.0
533,875 + MIT1002_00489 0.73 -2.0
533,875 + MIT1002_00489 0.73 -2.0
533,883 - MIT1002_00489 0.74 +0.1
533,883 - MIT1002_00489 0.74 +0.1
533,933 + MIT1002_00489 0.78 +0.0
533,958 - MIT1002_00489 0.80 -0.2
533,983 - MIT1002_00489 0.82 -1.6
533,983 - MIT1002_00489 0.82 -2.0
533,983 - MIT1002_00489 0.82 +1.0
534,010 + MIT1002_00489 0.85 +0.5
534,010 + MIT1002_00489 0.85 -0.3
534,010 + MIT1002_00489 0.85 -0.6
534,010 + MIT1002_00489 0.85 +0.2
534,010 + MIT1002_00489 0.85 +0.4
534,018 - MIT1002_00489 0.85 -0.4
534,020 - MIT1002_00489 0.86 +0.0
534,088 + +1.2
534,114 + -0.3
534,179 - +2.3
534,190 + -0.1
534,198 - -1.4
534,198 - +0.8
534,260 + +0.2
534,263 + +0.5
534,266 - -0.2
534,268 - -2.6
534,543 + MIT1002_00490 0.26 +0.3
534,548 + MIT1002_00490 0.26 +1.2
534,551 - MIT1002_00490 0.27 -1.5
534,551 - MIT1002_00490 0.27 +1.2
534,551 - MIT1002_00490 0.27 -0.9
534,551 - MIT1002_00490 0.27 +0.9
534,584 + MIT1002_00490 0.30 -0.9
534,589 + MIT1002_00490 0.31 +0.4
534,592 - MIT1002_00490 0.31 -0.7
534,614 - MIT1002_00490 0.34 -1.2
534,648 - MIT1002_00490 0.37 +1.1
534,648 - MIT1002_00490 0.37 -0.2
534,670 - MIT1002_00490 0.40 -0.1
534,773 + MIT1002_00490 0.51 +0.8
534,791 - MIT1002_00490 0.53 +2.9
534,809 + MIT1002_00490 0.55 +0.4
534,816 - MIT1002_00490 0.56 +0.7
534,822 - MIT1002_00490 0.57 +0.8
534,899 - MIT1002_00490 0.65 -1.3
534,973 + MIT1002_00490 0.73 -0.0
534,998 + MIT1002_00490 0.76 +0.1
534,998 + MIT1002_00490 0.76 -0.1
535,006 - MIT1002_00490 0.77 +0.1
535,011 - MIT1002_00490 0.77 +0.7
535,011 - MIT1002_00490 0.77 +1.2
535,011 - MIT1002_00490 0.77 +1.5
535,012 - MIT1002_00490 0.77 -0.1
535,089 + MIT1002_00490 0.86 +0.4
535,102 + MIT1002_00490 0.87 -0.3
535,112 + MIT1002_00490 0.89 +0.2
535,120 - MIT1002_00490 0.89 +1.0
535,145 + -2.3
535,156 + +0.2
535,156 + -1.3
535,156 + +0.1

Or see this region's nucleotide sequence