Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00477

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00476 and MIT1002_00477 are separated by 211 nucleotidesMIT1002_00477 and MIT1002_00478 overlap by 1 nucleotides MIT1002_00476: MIT1002_00476 - periplasmic repressor CpxP, at 520,206 to 521,087 _00476 MIT1002_00477: MIT1002_00477 - Response regulator ArlR, at 521,299 to 522,057 _00477 MIT1002_00478: MIT1002_00478 - Sensor protein CpxA, at 522,057 to 523,418 _00478 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.364 kb on + strand, within MIT1002_00476at 520.401 kb on - strand, within MIT1002_00476at 520.412 kb on + strand, within MIT1002_00476at 520.418 kb on + strand, within MIT1002_00476at 520.425 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.527 kb on - strand, within MIT1002_00476at 520.531 kb on + strand, within MIT1002_00476at 520.560 kb on + strand, within MIT1002_00476at 520.617 kb on - strand, within MIT1002_00476at 520.724 kb on + strand, within MIT1002_00476at 520.732 kb on - strand, within MIT1002_00476at 520.732 kb on - strand, within MIT1002_00476at 520.808 kb on + strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.918 kb on + strand, within MIT1002_00476at 520.937 kb on + strand, within MIT1002_00476at 520.951 kb on + strand, within MIT1002_00476at 520.952 kb on - strand, within MIT1002_00476at 521.049 kb on - strandat 521.112 kb on + strandat 521.112 kb on + strandat 521.120 kb on - strandat 521.120 kb on - strandat 521.153 kb on + strandat 521.153 kb on + strandat 521.161 kb on - strandat 521.196 kb on + strandat 521.199 kb on - strandat 521.317 kb on + strandat 521.324 kb on + strandat 521.332 kb on - strandat 521.334 kb on + strandat 521.390 kb on + strand, within MIT1002_00477at 521.399 kb on - strand, within MIT1002_00477at 521.399 kb on - strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.427 kb on + strand, within MIT1002_00477at 521.433 kb on + strand, within MIT1002_00477at 521.449 kb on + strand, within MIT1002_00477at 521.451 kb on - strand, within MIT1002_00477at 521.451 kb on - strand, within MIT1002_00477at 521.465 kb on - strand, within MIT1002_00477at 521.470 kb on + strand, within MIT1002_00477at 521.472 kb on - strand, within MIT1002_00477at 521.490 kb on - strand, within MIT1002_00477at 521.622 kb on - strand, within MIT1002_00477at 521.668 kb on + strand, within MIT1002_00477at 521.677 kb on - strand, within MIT1002_00477at 521.837 kb on - strand, within MIT1002_00477at 521.839 kb on - strand, within MIT1002_00477at 521.870 kb on + strand, within MIT1002_00477at 521.903 kb on + strand, within MIT1002_00477at 521.904 kb on - strand, within MIT1002_00477at 522.014 kb on - strandat 522.018 kb on + strandat 522.074 kb on - strandat 522.082 kb on + strandat 522.134 kb on + strandat 522.185 kb on + strandat 522.185 kb on + strandat 522.193 kb on - strandat 522.222 kb on + strand, within MIT1002_00478at 522.253 kb on - strand, within MIT1002_00478at 522.404 kb on - strand, within MIT1002_00478at 522.443 kb on - strand, within MIT1002_00478at 522.514 kb on + strand, within MIT1002_00478at 522.548 kb on - strand, within MIT1002_00478at 522.577 kb on + strand, within MIT1002_00478at 522.585 kb on + strand, within MIT1002_00478at 522.632 kb on - strand, within MIT1002_00478at 522.683 kb on + strand, within MIT1002_00478at 522.704 kb on + strand, within MIT1002_00478at 522.708 kb on + strand, within MIT1002_00478at 522.709 kb on + strand, within MIT1002_00478at 522.777 kb on - strand, within MIT1002_00478at 522.805 kb on + strand, within MIT1002_00478at 522.816 kb on + strand, within MIT1002_00478at 522.816 kb on + strand, within MIT1002_00478at 522.816 kb on + strand, within MIT1002_00478at 522.824 kb on - strand, within MIT1002_00478at 522.824 kb on - strand, within MIT1002_00478at 522.870 kb on - strand, within MIT1002_00478at 522.884 kb on - strand, within MIT1002_00478at 522.906 kb on - strand, within MIT1002_00478at 522.925 kb on + strand, within MIT1002_00478at 523.005 kb on + strand, within MIT1002_00478at 523.015 kb on + strand, within MIT1002_00478at 523.057 kb on - strand, within MIT1002_00478

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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520,342 + MIT1002_00476 0.15 -0.1
520,342 + MIT1002_00476 0.15 -1.4
520,342 + MIT1002_00476 0.15 -0.4
520,342 + MIT1002_00476 0.15 -0.2
520,350 - MIT1002_00476 0.16 -0.3
520,350 - MIT1002_00476 0.16 +1.3
520,350 - MIT1002_00476 0.16 -0.0
520,364 + MIT1002_00476 0.18 +0.4
520,401 - MIT1002_00476 0.22 -0.8
520,412 + MIT1002_00476 0.23 +0.1
520,418 + MIT1002_00476 0.24 -0.1
520,425 - MIT1002_00476 0.25 +1.7
520,426 - MIT1002_00476 0.25 -2.7
520,426 - MIT1002_00476 0.25 -1.5
520,426 - MIT1002_00476 0.25 +0.3
520,511 + MIT1002_00476 0.35 +0.1
520,511 + MIT1002_00476 0.35 -0.0
520,511 + MIT1002_00476 0.35 +0.8
520,519 - MIT1002_00476 0.35 +0.1
520,519 - MIT1002_00476 0.35 -0.9
520,519 - MIT1002_00476 0.35 +1.1
520,527 - MIT1002_00476 0.36 -1.7
520,531 + MIT1002_00476 0.37 -0.2
520,560 + MIT1002_00476 0.40 +0.0
520,617 - MIT1002_00476 0.47 -2.2
520,724 + MIT1002_00476 0.59 -0.3
520,732 - MIT1002_00476 0.60 -0.1
520,732 - MIT1002_00476 0.60 -0.7
520,808 + MIT1002_00476 0.68 +0.5
520,816 - MIT1002_00476 0.69 -0.1
520,816 - MIT1002_00476 0.69 -0.9
520,816 - MIT1002_00476 0.69 +0.7
520,816 - MIT1002_00476 0.69 +1.2
520,918 + MIT1002_00476 0.81 -2.3
520,937 + MIT1002_00476 0.83 -0.5
520,951 + MIT1002_00476 0.84 +0.1
520,952 - MIT1002_00476 0.85 +0.4
521,049 - +0.5
521,112 + +1.1
521,112 + +2.7
521,120 - +0.8
521,120 - -0.3
521,153 + -1.9
521,153 + +0.6
521,161 - +0.2
521,196 + +2.2
521,199 - -1.2
521,317 + +1.2
521,324 + -0.2
521,332 - -2.6
521,334 + +1.9
521,390 + MIT1002_00477 0.12 +0.5
521,399 - MIT1002_00477 0.13 +0.2
521,399 - MIT1002_00477 0.13 +0.9
521,414 + MIT1002_00477 0.15 +1.1
521,414 + MIT1002_00477 0.15 +0.8
521,414 + MIT1002_00477 0.15 -0.7
521,414 + MIT1002_00477 0.15 +0.3
521,427 + MIT1002_00477 0.17 -0.3
521,433 + MIT1002_00477 0.18 +0.1
521,449 + MIT1002_00477 0.20 +1.8
521,451 - MIT1002_00477 0.20 +0.5
521,451 - MIT1002_00477 0.20 -0.2
521,465 - MIT1002_00477 0.22 -0.9
521,470 + MIT1002_00477 0.23 +0.1
521,472 - MIT1002_00477 0.23 -1.3
521,490 - MIT1002_00477 0.25 -0.2
521,622 - MIT1002_00477 0.43 -0.4
521,668 + MIT1002_00477 0.49 +1.3
521,677 - MIT1002_00477 0.50 -1.1
521,837 - MIT1002_00477 0.71 +0.3
521,839 - MIT1002_00477 0.71 +1.2
521,870 + MIT1002_00477 0.75 +0.2
521,903 + MIT1002_00477 0.80 +0.6
521,904 - MIT1002_00477 0.80 +0.6
522,014 - +0.4
522,018 + +1.8
522,074 - -1.2
522,082 + +0.2
522,134 + -1.4
522,185 + -0.1
522,185 + -0.1
522,193 - +0.4
522,222 + MIT1002_00478 0.12 +0.6
522,253 - MIT1002_00478 0.14 +0.4
522,404 - MIT1002_00478 0.25 -1.1
522,443 - MIT1002_00478 0.28 -1.2
522,514 + MIT1002_00478 0.34 -1.1
522,548 - MIT1002_00478 0.36 -1.2
522,577 + MIT1002_00478 0.38 +0.1
522,585 + MIT1002_00478 0.39 -0.2
522,632 - MIT1002_00478 0.42 +0.5
522,683 + MIT1002_00478 0.46 -0.3
522,704 + MIT1002_00478 0.48 -0.7
522,708 + MIT1002_00478 0.48 -0.0
522,709 + MIT1002_00478 0.48 -0.2
522,777 - MIT1002_00478 0.53 +0.5
522,805 + MIT1002_00478 0.55 +0.1
522,816 + MIT1002_00478 0.56 -1.0
522,816 + MIT1002_00478 0.56 -0.8
522,816 + MIT1002_00478 0.56 -0.2
522,824 - MIT1002_00478 0.56 -0.5
522,824 - MIT1002_00478 0.56 +0.6
522,870 - MIT1002_00478 0.60 +0.1
522,884 - MIT1002_00478 0.61 +0.1
522,906 - MIT1002_00478 0.62 -2.3
522,925 + MIT1002_00478 0.64 -0.7
523,005 + MIT1002_00478 0.70 -0.3
523,015 + MIT1002_00478 0.70 -0.9
523,057 - MIT1002_00478 0.73 -0.1

Or see this region's nucleotide sequence