Experiment: monoculture; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00438 and MIT1002_00439 are separated by 297 nucleotides MIT1002_00439 and MIT1002_00440 are separated by 100 nucleotides MIT1002_00440 and MIT1002_00441 are separated by 65 nucleotides
MIT1002_00438: MIT1002_00438 - HDOD domain protein, at 479,946 to 481,112
_00438
MIT1002_00439: MIT1002_00439 - Para-aminobenzoate synthase glutamine amidotransferase component II, at 481,410 to 481,994
_00439
MIT1002_00440: MIT1002_00440 - Tryptophan--tRNA ligase, at 482,095 to 483,102
_00440
MIT1002_00441: MIT1002_00441 - Ribulose-phosphate 3-epimerase, at 483,168 to 483,845
_00441
Position (kb) 482
483
484 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 481.233 kb on + strand at 481.305 kb on - strand at 481.385 kb on - strand at 481.417 kb on + strand at 481.477 kb on + strand, within MIT1002_00439 at 481.477 kb on + strand, within MIT1002_00439 at 481.482 kb on + strand, within MIT1002_00439 at 481.482 kb on + strand, within MIT1002_00439 at 481.485 kb on - strand, within MIT1002_00439 at 481.485 kb on - strand, within MIT1002_00439 at 481.490 kb on - strand, within MIT1002_00439 at 481.490 kb on - strand, within MIT1002_00439 at 481.491 kb on + strand, within MIT1002_00439 at 481.562 kb on + strand, within MIT1002_00439 at 481.562 kb on + strand, within MIT1002_00439 at 481.570 kb on - strand, within MIT1002_00439 at 481.645 kb on + strand, within MIT1002_00439 at 481.655 kb on + strand, within MIT1002_00439 at 481.660 kb on + strand, within MIT1002_00439 at 481.694 kb on + strand, within MIT1002_00439 at 481.703 kb on + strand, within MIT1002_00439 at 481.703 kb on + strand, within MIT1002_00439 at 481.703 kb on - strand, within MIT1002_00439 at 481.703 kb on - strand, within MIT1002_00439 at 481.711 kb on - strand, within MIT1002_00439 at 481.739 kb on - strand, within MIT1002_00439 at 481.817 kb on - strand, within MIT1002_00439 at 481.823 kb on + strand, within MIT1002_00439 at 481.846 kb on + strand, within MIT1002_00439 at 481.885 kb on + strand, within MIT1002_00439 at 481.910 kb on - strand, within MIT1002_00439 at 481.913 kb on + strand, within MIT1002_00439 at 481.921 kb on - strand, within MIT1002_00439 at 481.924 kb on + strand, within MIT1002_00439 at 481.924 kb on + strand, within MIT1002_00439 at 481.932 kb on - strand, within MIT1002_00439 at 481.934 kb on + strand, within MIT1002_00439 at 481.952 kb on + strand at 481.960 kb on - strand at 481.986 kb on + strand at 481.991 kb on + strand at 481.991 kb on + strand at 481.999 kb on + strand at 482.053 kb on - strand at 483.899 kb on - strand at 483.934 kb on - strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.984 kb on - strand at 484.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2 remove 481,233 + +0.2 481,305 - -0.2 481,385 - +0.1 481,417 + +0.6 481,477 + MIT1002_00439 0.11 -3.6 481,477 + MIT1002_00439 0.11 -3.9 481,482 + MIT1002_00439 0.12 -0.4 481,482 + MIT1002_00439 0.12 -5.1 481,485 - MIT1002_00439 0.13 -6.1 481,485 - MIT1002_00439 0.13 -5.7 481,490 - MIT1002_00439 0.14 +0.1 481,490 - MIT1002_00439 0.14 -3.7 481,491 + MIT1002_00439 0.14 -1.7 481,562 + MIT1002_00439 0.26 -3.1 481,562 + MIT1002_00439 0.26 -4.2 481,570 - MIT1002_00439 0.27 -1.4 481,645 + MIT1002_00439 0.40 -1.8 481,655 + MIT1002_00439 0.42 -2.8 481,660 + MIT1002_00439 0.43 -4.1 481,694 + MIT1002_00439 0.49 -1.9 481,703 + MIT1002_00439 0.50 -3.3 481,703 + MIT1002_00439 0.50 -4.1 481,703 - MIT1002_00439 0.50 -1.3 481,703 - MIT1002_00439 0.50 -2.3 481,711 - MIT1002_00439 0.51 -1.8 481,739 - MIT1002_00439 0.56 -3.4 481,817 - MIT1002_00439 0.70 -4.3 481,823 + MIT1002_00439 0.71 -1.0 481,846 + MIT1002_00439 0.75 -4.0 481,885 + MIT1002_00439 0.81 -2.8 481,910 - MIT1002_00439 0.85 -2.0 481,913 + MIT1002_00439 0.86 -1.9 481,921 - MIT1002_00439 0.87 -4.2 481,924 + MIT1002_00439 0.88 -3.0 481,924 + MIT1002_00439 0.88 -2.6 481,932 - MIT1002_00439 0.89 -2.3 481,934 + MIT1002_00439 0.90 -4.0 481,952 + -4.2 481,960 - -3.9 481,986 + -3.4 481,991 + -4.5 481,991 + -3.0 481,999 + -5.2 482,053 - +0.6 483,899 - -1.5 483,934 - +1.3 483,943 + -0.9 483,943 + +1.8 483,943 + -0.8 483,943 + +2.2 483,943 + -0.5 483,951 - -1.5 483,951 - -1.1 483,951 - -0.0 483,951 - -0.2 483,984 - +0.3 484,028 - +0.3
Or see this region's nucleotide sequence