Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00239

Experiment: monoculture; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00237 and MIT1002_00238 are separated by 91 nucleotidesMIT1002_00238 and MIT1002_00239 are separated by 113 nucleotidesMIT1002_00239 and MIT1002_00240 are separated by 59 nucleotidesMIT1002_00240 and MIT1002_00241 are separated by 151 nucleotides MIT1002_00237: MIT1002_00237 - tRNA (guanine-N(7)-)-methyltransferase, at 266,675 to 267,394 _00237 MIT1002_00238: MIT1002_00238 - acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase, at 267,486 to 268,190 _00238 MIT1002_00239: MIT1002_00239 - A/G-specific adenine glycosylase, at 268,304 to 269,371 _00239 MIT1002_00240: MIT1002_00240 - putative Fe(2+)-trafficking protein, at 269,431 to 269,703 _00240 MIT1002_00241: MIT1002_00241 - tRNA-Phe, at 269,855 to 269,930 _00241 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 267.588 kb on - strand, within MIT1002_00238at 267.593 kb on - strand, within MIT1002_00238at 267.646 kb on + strand, within MIT1002_00238at 267.838 kb on + strand, within MIT1002_00238at 267.854 kb on + strand, within MIT1002_00238at 267.908 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.952 kb on + strand, within MIT1002_00238at 267.960 kb on - strand, within MIT1002_00238at 267.960 kb on - strand, within MIT1002_00238at 268.095 kb on + strand, within MIT1002_00238at 268.100 kb on + strand, within MIT1002_00238at 268.100 kb on + strand, within MIT1002_00238at 268.105 kb on + strand, within MIT1002_00238at 268.108 kb on - strand, within MIT1002_00238at 268.108 kb on - strand, within MIT1002_00238at 268.164 kb on + strandat 268.181 kb on + strandat 268.181 kb on + strandat 268.181 kb on + strandat 268.181 kb on + strandat 268.189 kb on - strandat 268.315 kb on + strandat 268.337 kb on - strandat 268.345 kb on - strandat 268.375 kb on + strandat 268.499 kb on + strand, within MIT1002_00239at 268.499 kb on + strand, within MIT1002_00239at 268.520 kb on + strand, within MIT1002_00239at 268.551 kb on + strand, within MIT1002_00239at 268.553 kb on - strand, within MIT1002_00239at 268.553 kb on - strand, within MIT1002_00239at 268.553 kb on - strand, within MIT1002_00239at 268.558 kb on - strand, within MIT1002_00239at 268.559 kb on - strand, within MIT1002_00239at 268.635 kb on + strand, within MIT1002_00239at 268.669 kb on + strand, within MIT1002_00239at 268.669 kb on + strand, within MIT1002_00239at 268.718 kb on + strand, within MIT1002_00239at 268.758 kb on + strand, within MIT1002_00239at 268.759 kb on - strand, within MIT1002_00239at 268.846 kb on + strand, within MIT1002_00239at 268.881 kb on - strand, within MIT1002_00239at 268.917 kb on - strand, within MIT1002_00239at 268.922 kb on - strand, within MIT1002_00239at 268.958 kb on - strand, within MIT1002_00239at 269.042 kb on + strand, within MIT1002_00239at 269.042 kb on + strand, within MIT1002_00239at 269.042 kb on + strand, within MIT1002_00239at 269.042 kb on - strand, within MIT1002_00239at 269.061 kb on + strand, within MIT1002_00239at 269.061 kb on + strand, within MIT1002_00239at 269.061 kb on + strand, within MIT1002_00239at 269.069 kb on - strand, within MIT1002_00239at 269.086 kb on + strand, within MIT1002_00239at 269.086 kb on + strand, within MIT1002_00239at 269.091 kb on + strand, within MIT1002_00239at 269.092 kb on - strand, within MIT1002_00239at 269.094 kb on - strand, within MIT1002_00239at 269.094 kb on - strand, within MIT1002_00239at 269.094 kb on - strand, within MIT1002_00239at 269.119 kb on + strand, within MIT1002_00239at 269.119 kb on + strand, within MIT1002_00239at 269.127 kb on - strand, within MIT1002_00239at 269.144 kb on - strand, within MIT1002_00239at 269.158 kb on + strand, within MIT1002_00239at 269.166 kb on - strand, within MIT1002_00239at 269.194 kb on - strand, within MIT1002_00239at 269.194 kb on - strand, within MIT1002_00239at 269.205 kb on + strand, within MIT1002_00239at 269.205 kb on - strand, within MIT1002_00239at 269.213 kb on - strand, within MIT1002_00239at 269.232 kb on + strand, within MIT1002_00239at 269.373 kb on - strandat 269.451 kb on - strandat 269.615 kb on - strand, within MIT1002_00240at 269.660 kb on + strand, within MIT1002_00240at 269.668 kb on - strand, within MIT1002_00240at 269.668 kb on - strand, within MIT1002_00240at 269.955 kb on - strandat 270.012 kb on - strandat 270.016 kb on + strandat 270.031 kb on + strandat 270.060 kb on - strandat 270.074 kb on - strandat 270.122 kb on + strandat 270.163 kb on - strandat 270.195 kb on - strandat 270.214 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.269 kb on - strandat 270.296 kb on + strandat 270.299 kb on - strandat 270.304 kb on - strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.313 kb on - strandat 270.313 kb on - strandat 270.313 kb on - strandat 270.313 kb on - strandat 270.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2
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267,588 - MIT1002_00238 0.14 +0.2
267,593 - MIT1002_00238 0.15 +0.3
267,646 + MIT1002_00238 0.23 -0.9
267,838 + MIT1002_00238 0.50 +1.0
267,854 + MIT1002_00238 0.52 +0.5
267,908 + MIT1002_00238 0.60 -1.0
267,952 + MIT1002_00238 0.66 +0.5
267,952 + MIT1002_00238 0.66 -0.7
267,952 + MIT1002_00238 0.66 +0.6
267,952 + MIT1002_00238 0.66 +1.7
267,952 + MIT1002_00238 0.66 -1.0
267,952 + MIT1002_00238 0.66 -2.1
267,960 - MIT1002_00238 0.67 -1.2
267,960 - MIT1002_00238 0.67 +0.2
268,095 + MIT1002_00238 0.86 -0.1
268,100 + MIT1002_00238 0.87 +0.2
268,100 + MIT1002_00238 0.87 +0.5
268,105 + MIT1002_00238 0.88 -1.6
268,108 - MIT1002_00238 0.88 +1.3
268,108 - MIT1002_00238 0.88 +1.3
268,164 + -1.2
268,181 + +0.1
268,181 + -0.9
268,181 + +1.6
268,181 + -1.9
268,189 - -1.3
268,315 + +0.1
268,337 - -1.3
268,345 - +0.6
268,375 + +1.3
268,499 + MIT1002_00239 0.18 +0.5
268,499 + MIT1002_00239 0.18 +2.9
268,520 + MIT1002_00239 0.20 +0.1
268,551 + MIT1002_00239 0.23 +0.4
268,553 - MIT1002_00239 0.23 -1.2
268,553 - MIT1002_00239 0.23 +1.0
268,553 - MIT1002_00239 0.23 +0.0
268,558 - MIT1002_00239 0.24 -0.2
268,559 - MIT1002_00239 0.24 +0.5
268,635 + MIT1002_00239 0.31 +1.4
268,669 + MIT1002_00239 0.34 -0.5
268,669 + MIT1002_00239 0.34 +0.7
268,718 + MIT1002_00239 0.39 -1.1
268,758 + MIT1002_00239 0.43 +0.5
268,759 - MIT1002_00239 0.43 -0.6
268,846 + MIT1002_00239 0.51 -0.1
268,881 - MIT1002_00239 0.54 +1.4
268,917 - MIT1002_00239 0.57 +0.3
268,922 - MIT1002_00239 0.58 -0.7
268,958 - MIT1002_00239 0.61 +0.2
269,042 + MIT1002_00239 0.69 +1.5
269,042 + MIT1002_00239 0.69 +0.4
269,042 + MIT1002_00239 0.69 -1.2
269,042 - MIT1002_00239 0.69 -1.2
269,061 + MIT1002_00239 0.71 -0.3
269,061 + MIT1002_00239 0.71 -0.6
269,061 + MIT1002_00239 0.71 +1.1
269,069 - MIT1002_00239 0.72 -0.2
269,086 + MIT1002_00239 0.73 +0.7
269,086 + MIT1002_00239 0.73 +0.9
269,091 + MIT1002_00239 0.74 +1.2
269,092 - MIT1002_00239 0.74 +0.2
269,094 - MIT1002_00239 0.74 -0.7
269,094 - MIT1002_00239 0.74 +1.0
269,094 - MIT1002_00239 0.74 -0.6
269,119 + MIT1002_00239 0.76 -0.0
269,119 + MIT1002_00239 0.76 +1.0
269,127 - MIT1002_00239 0.77 -0.2
269,144 - MIT1002_00239 0.79 -2.1
269,158 + MIT1002_00239 0.80 -1.1
269,166 - MIT1002_00239 0.81 +1.4
269,194 - MIT1002_00239 0.83 +3.5
269,194 - MIT1002_00239 0.83 +0.2
269,205 + MIT1002_00239 0.84 +0.7
269,205 - MIT1002_00239 0.84 -0.8
269,213 - MIT1002_00239 0.85 -1.1
269,232 + MIT1002_00239 0.87 +1.9
269,373 - +1.0
269,451 - +0.1
269,615 - MIT1002_00240 0.67 -0.5
269,660 + MIT1002_00240 0.84 +0.7
269,668 - MIT1002_00240 0.87 -2.4
269,668 - MIT1002_00240 0.87 +0.1
269,955 - +0.4
270,012 - +0.5
270,016 + +0.1
270,031 + +0.4
270,060 - -0.4
270,074 - -0.2
270,122 + -2.1
270,163 - -0.7
270,195 - +0.3
270,214 + -0.8
270,259 + -1.3
270,259 + -0.2
270,259 + +0.2
270,259 + -0.0
270,259 + +1.0
270,259 + -0.1
270,259 + +1.8
270,259 + +1.6
270,259 + -2.1
270,267 - +0.5
270,267 - -0.1
270,267 - -1.9
270,267 - +1.1
270,267 - -0.8
270,269 - -0.4
270,296 + +0.3
270,299 - -1.2
270,304 - -0.3
270,305 + +1.2
270,305 + -0.6
270,305 + -0.5
270,305 + +1.0
270,305 + +0.5
270,305 + +0.9
270,305 + +0.4
270,305 + -2.2
270,305 + -0.8
270,305 + +0.6
270,305 + -1.2
270,305 + -0.2
270,313 - +0.0
270,313 - -0.7
270,313 - +0.1
270,313 - -0.7
270,360 - -0.4

Or see this region's nucleotide sequence