Experiment: monoculture; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00048 and MIT1002_00049 are separated by 209 nucleotides MIT1002_00049 and MIT1002_00050 are separated by 92 nucleotides MIT1002_00050 and MIT1002_00051 are separated by 94 nucleotides
MIT1002_00048: MIT1002_00048 - DNA/pantothenate metabolism flavoprotein, at 54,297 to 55,526
_00048
MIT1002_00049: MIT1002_00049 - DNA repair protein RadC, at 55,736 to 56,413
_00049
MIT1002_00050: MIT1002_00050 - hypothetical protein, at 56,506 to 56,859
_00050
MIT1002_00051: MIT1002_00051 - hypothetical protein, at 56,954 to 57,643
_00051
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.596 kb on + strand at 55.631 kb on + strand at 55.631 kb on + strand at 55.631 kb on + strand at 55.803 kb on + strand at 55.820 kb on - strand, within MIT1002_00049 at 55.875 kb on - strand, within MIT1002_00049 at 55.953 kb on + strand, within MIT1002_00049 at 55.953 kb on + strand, within MIT1002_00049 at 55.961 kb on - strand, within MIT1002_00049 at 55.968 kb on + strand, within MIT1002_00049 at 55.971 kb on - strand, within MIT1002_00049 at 55.978 kb on + strand, within MIT1002_00049 at 55.986 kb on - strand, within MIT1002_00049 at 56.059 kb on + strand, within MIT1002_00049 at 56.092 kb on - strand, within MIT1002_00049 at 56.147 kb on + strand, within MIT1002_00049 at 56.148 kb on - strand, within MIT1002_00049 at 56.169 kb on - strand, within MIT1002_00049 at 56.169 kb on - strand, within MIT1002_00049 at 56.171 kb on + strand, within MIT1002_00049 at 56.171 kb on + strand, within MIT1002_00049 at 56.179 kb on - strand, within MIT1002_00049 at 56.189 kb on - strand, within MIT1002_00049 at 56.189 kb on - strand, within MIT1002_00049 at 56.189 kb on - strand, within MIT1002_00049 at 56.193 kb on + strand, within MIT1002_00049 at 56.276 kb on + strand, within MIT1002_00049 at 56.306 kb on + strand, within MIT1002_00049 at 56.511 kb on - strand at 56.511 kb on - strand at 56.670 kb on + strand, within MIT1002_00050 at 56.744 kb on - strand, within MIT1002_00050 at 56.919 kb on + strand at 56.965 kb on - strand at 57.018 kb on - strand at 57.021 kb on + strand at 57.049 kb on - strand, within MIT1002_00051 at 57.265 kb on + strand, within MIT1002_00051 at 57.268 kb on - strand, within MIT1002_00051 at 57.363 kb on - strand, within MIT1002_00051 at 57.403 kb on - strand, within MIT1002_00051
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 2 remove 55,596 + -0.2 55,631 + +1.0 55,631 + +0.3 55,631 + +0.7 55,803 + +0.1 55,820 - MIT1002_00049 0.12 +1.8 55,875 - MIT1002_00049 0.21 -0.1 55,953 + MIT1002_00049 0.32 -0.3 55,953 + MIT1002_00049 0.32 +0.2 55,961 - MIT1002_00049 0.33 +0.5 55,968 + MIT1002_00049 0.34 +0.4 55,971 - MIT1002_00049 0.35 +0.1 55,978 + MIT1002_00049 0.36 +0.5 55,986 - MIT1002_00049 0.37 +0.3 56,059 + MIT1002_00049 0.48 -1.4 56,092 - MIT1002_00049 0.53 +0.3 56,147 + MIT1002_00049 0.61 +0.9 56,148 - MIT1002_00049 0.61 -0.8 56,169 - MIT1002_00049 0.64 -0.7 56,169 - MIT1002_00049 0.64 -0.7 56,171 + MIT1002_00049 0.64 -1.5 56,171 + MIT1002_00049 0.64 -0.2 56,179 - MIT1002_00049 0.65 +0.0 56,189 - MIT1002_00049 0.67 -2.4 56,189 - MIT1002_00049 0.67 -0.7 56,189 - MIT1002_00049 0.67 +0.6 56,193 + MIT1002_00049 0.67 -1.0 56,276 + MIT1002_00049 0.80 -1.1 56,306 + MIT1002_00049 0.84 +2.0 56,511 - +0.5 56,511 - +1.2 56,670 + MIT1002_00050 0.46 -0.1 56,744 - MIT1002_00050 0.67 +0.5 56,919 + -0.6 56,965 - +0.9 57,018 - +0.2 57,021 + +0.3 57,049 - MIT1002_00051 0.14 -0.3 57,265 + MIT1002_00051 0.45 +1.7 57,268 - MIT1002_00051 0.46 -2.0 57,363 - MIT1002_00051 0.59 +1.0 57,403 - MIT1002_00051 0.65 -1.1
Or see this region's nucleotide sequence