Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04228 and MIT1002_04229 are separated by 60 nucleotides MIT1002_04229 and MIT1002_04230 are separated by 244 nucleotides MIT1002_04230 and MIT1002_04231 are separated by 264 nucleotides
MIT1002_04228: MIT1002_04228 - Excalibur calcium-binding domain protein, at 96,256 to 96,987
_04228
MIT1002_04229: MIT1002_04229 - N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated, at 97,048 to 97,704
_04229
MIT1002_04230: MIT1002_04230 - hypothetical protein, at 97,949 to 98,215
_04230
MIT1002_04231: MIT1002_04231 - hypothetical protein, at 98,480 to 98,878
_04231
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.989 kb on + strand at 96.989 kb on + strand at 96.989 kb on + strand at 96.994 kb on + strand at 96.997 kb on - strand at 96.997 kb on - strand at 96.997 kb on - strand at 97.003 kb on + strand at 97.028 kb on - strand at 97.028 kb on - strand at 97.048 kb on - strand at 97.114 kb on + strand, within MIT1002_04229 at 97.134 kb on + strand, within MIT1002_04229 at 97.146 kb on + strand, within MIT1002_04229 at 97.165 kb on - strand, within MIT1002_04229 at 97.167 kb on - strand, within MIT1002_04229 at 97.169 kb on + strand, within MIT1002_04229 at 97.186 kb on - strand, within MIT1002_04229 at 97.237 kb on - strand, within MIT1002_04229 at 97.263 kb on + strand, within MIT1002_04229 at 97.273 kb on + strand, within MIT1002_04229 at 97.281 kb on + strand, within MIT1002_04229 at 97.289 kb on - strand, within MIT1002_04229 at 97.311 kb on + strand, within MIT1002_04229 at 97.324 kb on + strand, within MIT1002_04229 at 97.331 kb on - strand, within MIT1002_04229 at 97.336 kb on - strand, within MIT1002_04229 at 97.390 kb on - strand, within MIT1002_04229 at 97.411 kb on + strand, within MIT1002_04229 at 97.412 kb on + strand, within MIT1002_04229 at 97.413 kb on + strand, within MIT1002_04229 at 97.413 kb on + strand, within MIT1002_04229 at 97.413 kb on + strand, within MIT1002_04229 at 97.414 kb on - strand, within MIT1002_04229 at 97.414 kb on - strand, within MIT1002_04229 at 97.420 kb on - strand, within MIT1002_04229 at 97.421 kb on - strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.427 kb on + strand, within MIT1002_04229 at 97.432 kb on - strand, within MIT1002_04229 at 97.435 kb on - strand, within MIT1002_04229 at 97.435 kb on - strand, within MIT1002_04229 at 97.494 kb on + strand, within MIT1002_04229 at 97.499 kb on + strand, within MIT1002_04229 at 97.502 kb on - strand, within MIT1002_04229 at 97.504 kb on - strand, within MIT1002_04229 at 97.540 kb on + strand, within MIT1002_04229 at 97.554 kb on - strand, within MIT1002_04229 at 97.561 kb on + strand, within MIT1002_04229 at 97.603 kb on + strand, within MIT1002_04229 at 97.603 kb on + strand, within MIT1002_04229 at 97.637 kb on + strand, within MIT1002_04229 at 97.744 kb on - strand at 97.757 kb on + strand at 97.760 kb on - strand at 97.771 kb on + strand at 97.776 kb on + strand at 97.784 kb on - strand at 97.796 kb on - strand at 97.838 kb on - strand at 97.842 kb on + strand at 97.860 kb on - strand at 97.860 kb on - strand at 97.862 kb on + strand at 97.865 kb on - strand at 97.866 kb on - strand at 97.892 kb on + strand at 97.906 kb on + strand at 97.912 kb on + strand at 97.920 kb on - strand at 97.932 kb on - strand at 97.941 kb on - strand at 98.055 kb on - strand, within MIT1002_04230 at 98.059 kb on + strand, within MIT1002_04230 at 98.059 kb on + strand, within MIT1002_04230 at 98.105 kb on - strand, within MIT1002_04230 at 98.115 kb on - strand, within MIT1002_04230 at 98.172 kb on + strand, within MIT1002_04230 at 98.172 kb on + strand, within MIT1002_04230 at 98.180 kb on - strand, within MIT1002_04230 at 98.205 kb on + strand at 98.240 kb on - strand at 98.267 kb on + strand at 98.274 kb on + strand at 98.309 kb on + strand at 98.328 kb on + strand at 98.328 kb on + strand at 98.336 kb on - strand at 98.336 kb on - strand at 98.338 kb on + strand at 98.338 kb on - strand at 98.339 kb on - strand at 98.341 kb on + strand at 98.348 kb on - strand at 98.471 kb on - strand at 98.564 kb on + strand, within MIT1002_04231 at 98.564 kb on - strand, within MIT1002_04231 at 98.566 kb on - strand, within MIT1002_04231 at 98.583 kb on + strand, within MIT1002_04231 at 98.592 kb on - strand, within MIT1002_04231 at 98.592 kb on - strand, within MIT1002_04231 at 98.669 kb on - strand, within MIT1002_04231 at 98.670 kb on - strand, within MIT1002_04231 at 98.675 kb on - strand, within MIT1002_04231 at 98.707 kb on + strand, within MIT1002_04231 at 98.707 kb on + strand, within MIT1002_04231 at 98.707 kb on + strand, within MIT1002_04231 at 98.715 kb on - strand, within MIT1002_04231 at 98.715 kb on - strand, within MIT1002_04231 at 98.715 kb on - strand, within MIT1002_04231 at 98.715 kb on - strand, within MIT1002_04231 at 98.733 kb on + strand, within MIT1002_04231 at 98.804 kb on + strand, within MIT1002_04231 at 98.819 kb on + strand, within MIT1002_04231 at 98.842 kb on + strand at 98.850 kb on - strand at 98.880 kb on + strand at 98.903 kb on + strand at 98.903 kb on + strand at 98.903 kb on + strand at 98.911 kb on - strand at 98.911 kb on - strand at 98.911 kb on - strand at 98.948 kb on + strand at 98.956 kb on + strand at 98.956 kb on - strand at 98.957 kb on - strand at 98.974 kb on + strand at 98.982 kb on - strand at 99.008 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.024 kb on + strand at 99.027 kb on - strand at 99.027 kb on - strand at 99.027 kb on - strand at 99.029 kb on - strand at 99.032 kb on - strand at 99.034 kb on + strand at 99.034 kb on - strand at 99.037 kb on - strand at 99.039 kb on + strand at 99.039 kb on + strand at 99.040 kb on - strand at 99.046 kb on + strand at 99.047 kb on - strand at 99.049 kb on + strand at 99.049 kb on + strand at 99.054 kb on + strand at 99.066 kb on + strand at 99.074 kb on + strand at 99.082 kb on - strand at 99.082 kb on - strand at 99.124 kb on - strand at 99.175 kb on + strand at 99.183 kb on - strand at 99.183 kb on - strand at 99.183 kb on - strand at 99.183 kb on - strand at 99.184 kb on - strand at 99.190 kb on - strand at 99.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 96,989 + -0.0 96,989 + -1.9 96,989 + +0.0 96,994 + -0.8 96,997 - +0.3 96,997 - +0.2 96,997 - +2.3 97,003 + -0.4 97,028 - -0.9 97,028 - +0.4 97,048 - -0.7 97,114 + MIT1002_04229 0.10 -0.1 97,134 + MIT1002_04229 0.13 -0.6 97,146 + MIT1002_04229 0.15 +0.1 97,165 - MIT1002_04229 0.18 -0.2 97,167 - MIT1002_04229 0.18 -1.6 97,169 + MIT1002_04229 0.18 +0.8 97,186 - MIT1002_04229 0.21 +0.1 97,237 - MIT1002_04229 0.29 +0.4 97,263 + MIT1002_04229 0.33 +0.8 97,273 + MIT1002_04229 0.34 +0.4 97,281 + MIT1002_04229 0.35 -0.2 97,289 - MIT1002_04229 0.37 -0.4 97,311 + MIT1002_04229 0.40 -3.2 97,324 + MIT1002_04229 0.42 +1.2 97,331 - MIT1002_04229 0.43 +0.4 97,336 - MIT1002_04229 0.44 -0.8 97,390 - MIT1002_04229 0.52 -1.0 97,411 + MIT1002_04229 0.55 -0.7 97,412 + MIT1002_04229 0.55 -1.7 97,413 + MIT1002_04229 0.56 +0.9 97,413 + MIT1002_04229 0.56 -0.6 97,413 + MIT1002_04229 0.56 +0.9 97,414 - MIT1002_04229 0.56 -0.1 97,414 - MIT1002_04229 0.56 -0.3 97,420 - MIT1002_04229 0.57 +0.2 97,421 - MIT1002_04229 0.57 -0.4 97,427 + MIT1002_04229 0.58 -1.2 97,427 + MIT1002_04229 0.58 +0.4 97,427 + MIT1002_04229 0.58 -1.6 97,427 + MIT1002_04229 0.58 +1.8 97,427 + MIT1002_04229 0.58 -1.7 97,432 - MIT1002_04229 0.58 +0.3 97,435 - MIT1002_04229 0.59 +0.2 97,435 - MIT1002_04229 0.59 +0.1 97,494 + MIT1002_04229 0.68 +0.4 97,499 + MIT1002_04229 0.69 -0.4 97,502 - MIT1002_04229 0.69 -0.0 97,504 - MIT1002_04229 0.69 +0.3 97,540 + MIT1002_04229 0.75 -0.4 97,554 - MIT1002_04229 0.77 +0.3 97,561 + MIT1002_04229 0.78 -1.0 97,603 + MIT1002_04229 0.84 +0.4 97,603 + MIT1002_04229 0.84 -0.8 97,637 + MIT1002_04229 0.90 -0.9 97,744 - +0.8 97,757 + +0.3 97,760 - +0.1 97,771 + -0.2 97,776 + -0.2 97,784 - +0.3 97,796 - +0.8 97,838 - -0.1 97,842 + +1.1 97,860 - -0.4 97,860 - -0.1 97,862 + +0.1 97,865 - -1.1 97,866 - -0.1 97,892 + -0.2 97,906 + +1.3 97,912 + -1.4 97,920 - +0.2 97,932 - -0.3 97,941 - -1.1 98,055 - MIT1002_04230 0.40 -1.5 98,059 + MIT1002_04230 0.41 +0.8 98,059 + MIT1002_04230 0.41 -0.7 98,105 - MIT1002_04230 0.58 -0.6 98,115 - MIT1002_04230 0.62 -1.0 98,172 + MIT1002_04230 0.84 -0.7 98,172 + MIT1002_04230 0.84 +0.1 98,180 - MIT1002_04230 0.87 -0.4 98,205 + +1.3 98,240 - +0.4 98,267 + +0.4 98,274 + -0.1 98,309 + -0.4 98,328 + -0.0 98,328 + -2.1 98,336 - +1.6 98,336 - +0.5 98,338 + +0.6 98,338 - +0.4 98,339 - +0.6 98,341 + +0.0 98,348 - -0.1 98,471 - +0.8 98,564 + MIT1002_04231 0.21 +1.6 98,564 - MIT1002_04231 0.21 +0.4 98,566 - MIT1002_04231 0.22 +0.4 98,583 + MIT1002_04231 0.26 +0.7 98,592 - MIT1002_04231 0.28 +0.2 98,592 - MIT1002_04231 0.28 +0.0 98,669 - MIT1002_04231 0.47 -1.2 98,670 - MIT1002_04231 0.48 +0.3 98,675 - MIT1002_04231 0.49 -0.3 98,707 + MIT1002_04231 0.57 +0.1 98,707 + MIT1002_04231 0.57 -0.3 98,707 + MIT1002_04231 0.57 -0.8 98,715 - MIT1002_04231 0.59 -0.4 98,715 - MIT1002_04231 0.59 -0.1 98,715 - MIT1002_04231 0.59 +0.2 98,715 - MIT1002_04231 0.59 -0.4 98,733 + MIT1002_04231 0.63 -1.0 98,804 + MIT1002_04231 0.81 +0.3 98,819 + MIT1002_04231 0.85 +0.4 98,842 + +0.3 98,850 - -0.4 98,880 + +0.4 98,903 + +0.1 98,903 + +1.4 98,903 + +1.0 98,911 - +0.3 98,911 - +0.3 98,911 - +1.1 98,948 + +0.1 98,956 + +0.8 98,956 - -0.0 98,957 - -0.7 98,974 + -1.6 98,982 - -0.2 99,008 + +0.1 99,019 + +0.0 99,019 + +0.1 99,024 + -1.0 99,027 - +0.4 99,027 - -0.8 99,027 - -0.2 99,029 - -1.0 99,032 - -0.6 99,034 + +0.0 99,034 - +0.7 99,037 - -2.4 99,039 + +0.6 99,039 + +0.1 99,040 - +0.2 99,046 + -1.8 99,047 - +0.5 99,049 + +0.4 99,049 + -0.4 99,054 + +0.2 99,066 + -0.1 99,074 + +1.0 99,082 - -0.9 99,082 - +1.5 99,124 - -0.5 99,175 + +0.3 99,183 - -0.8 99,183 - +0.4 99,183 - +0.4 99,183 - +1.1 99,184 - -0.3 99,190 - -1.2 99,213 + -0.3
Or see this region's nucleotide sequence