Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04039

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
4,529,743	+		MIT1002_04038	0.70	+0.3
4,529,743	+		MIT1002_04038	0.70	-0.2
4,529,751	-		MIT1002_04038	0.70	-1.4
4,529,751	-		MIT1002_04038	0.70	+0.4
4,529,751	-		MIT1002_04038	0.70	-0.6
4,529,759	+		MIT1002_04038	0.71	+1.0
4,529,762	-		MIT1002_04038	0.71	+1.9
4,529,767	-		MIT1002_04038	0.71	+1.7
4,529,794	+		MIT1002_04038	0.72	+0.0
4,529,812	-		MIT1002_04038	0.73	+1.2
4,529,834	-		MIT1002_04038	0.74	+1.0
4,529,875	+		MIT1002_04038	0.76	+0.4
4,529,936	+		MIT1002_04038	0.78	-0.8
4,529,939	-		MIT1002_04038	0.78	-0.2
4,529,939	-		MIT1002_04038	0.78	+0.1
4,530,076	+		MIT1002_04038	0.84	+0.7
4,530,295	+				-0.5
4,530,304	+				+0.3
4,530,328	+				+0.9
4,530,336	-				+0.2
4,530,426	+				-0.3
4,530,550	-				-2.7
4,530,606	-				-0.5
4,530,655	+				-1.3
4,533,069	+				-0.7
4,533,127	+				-0.0
4,533,203	-				+0.5
4,533,301	-				-1.8
4,533,306	-				-0.9
4,533,346	+				-0.0
4,533,354	-				-0.5
4,533,365	+				-0.9
4,533,396	+				-0.5
4,533,404	-				+0.0
4,533,411	+				-3.8
4,533,451	-				-2.4
4,533,495	-				-2.3
4,533,541	-				-4.6
4,533,557	-		MIT1002_04040	0.10	-2.4
4,533,619	-		MIT1002_04040	0.14	-4.0
4,533,691	-		MIT1002_04040	0.19	-3.6
4,533,741	+		MIT1002_04040	0.22	-5.3
4,533,741	-		MIT1002_04040	0.22	-3.4
4,533,741	-		MIT1002_04040	0.22	-2.3
4,533,743	+		MIT1002_04040	0.22	+0.0
4,533,743	+		MIT1002_04040	0.22	-2.0
4,533,743	+		MIT1002_04040	0.22	-1.3
4,533,743	+		MIT1002_04040	0.22	-0.8
4,533,751	-		MIT1002_04040	0.23	-1.0
4,533,751	-		MIT1002_04040	0.23	+0.0
4,533,751	-		MIT1002_04040	0.23	-4.3
4,533,751	-		MIT1002_04040	0.23	-3.3
4,533,751	-		MIT1002_04040	0.23	-3.9
4,533,751	-		MIT1002_04040	0.23	-4.3
4,533,751	-		MIT1002_04040	0.23	-2.7
4,533,751	-		MIT1002_04040	0.23	-3.3
4,533,751	-		MIT1002_04040	0.23	-2.6
4,533,751	-		MIT1002_04040	0.23	-1.6
4,533,798	+		MIT1002_04040	0.26	-3.5
4,533,798	+		MIT1002_04040	0.26	-3.5
4,533,798	+		MIT1002_04040	0.26	-4.4
4,533,806	-		MIT1002_04040	0.26	-0.3
4,533,806	-		MIT1002_04040	0.26	-4.3
4,533,806	-		MIT1002_04040	0.26	-2.9
4,533,806	-		MIT1002_04040	0.26	-2.4
4,533,806	-		MIT1002_04040	0.26	-6.1
4,533,813	-		MIT1002_04040	0.27	-9.5
4,533,909	+		MIT1002_04040	0.33	-1.6
4,533,976	-		MIT1002_04040	0.37	-2.6
4,533,988	+		MIT1002_04040	0.38	-3.8
4,533,996	-		MIT1002_04040	0.38	-2.1