Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04038

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
4,527,172	+		MIT1002_04037	0.77	+0.2
4,527,180	-		MIT1002_04037	0.78	+0.0
4,527,232	+		MIT1002_04037	0.79	+0.8
4,527,232	+		MIT1002_04037	0.79	-0.2
4,527,305	-		MIT1002_04037	0.81	+1.1
4,527,310	+		MIT1002_04037	0.81	-0.0
4,527,325	-		MIT1002_04037	0.82	-0.1
4,527,348	+		MIT1002_04037	0.82	+0.4
4,527,413	-		MIT1002_04037	0.84	+1.5
4,527,414	+		MIT1002_04037	0.84	+0.7
4,527,418	-		MIT1002_04037	0.84	+1.1
4,527,422	-		MIT1002_04037	0.84	-2.0
4,527,463	-		MIT1002_04037	0.86	-0.3
4,527,463	-		MIT1002_04037	0.86	-0.3
4,527,471	+		MIT1002_04037	0.86	+0.4
4,527,529	+		MIT1002_04037	0.88	+0.6
4,527,541	+		MIT1002_04037	0.88	-1.1
4,527,580	-		MIT1002_04037	0.89	-0.0
4,527,600	+		MIT1002_04037	0.89	-0.3
4,527,608	+		MIT1002_04037	0.90	+1.0
4,527,650	+				-1.0
4,527,658	-				+0.2
4,527,675	-				-0.2
4,527,675	-				+1.0
4,527,687	+				+0.4
4,527,695	-				+0.2
4,527,719	+				+2.4
4,527,719	-				-1.0
4,527,726	-				-0.1
4,527,727	-				-0.3
4,527,727	-				-0.1
4,527,727	-				+1.4
4,527,742	-				-2.7
4,527,765	+				+1.5
4,527,775	+				+0.6
4,527,788	-				+0.1
4,527,808	-				-2.2
4,527,811	+				+0.2
4,527,819	-				+0.4
4,527,824	-				+0.5
4,527,859	+				-1.8
4,527,861	+				+0.7
4,527,869	-				-1.1
4,528,026	-				-0.1
4,528,096	+				+0.2
4,528,132	+				-1.8
4,528,134	-				+0.5
4,528,140	-				-1.1
4,528,186	+				+0.4
4,528,186	+				-1.2
4,528,186	+				+0.2
4,528,186	+				-0.5
4,528,186	+				+0.0
4,528,186	+				+0.7
4,528,187	-				+2.0
4,528,191	+				-2.6
4,528,194	-				+1.4
4,528,194	-				-1.7
4,528,194	-				+0.1
4,528,194	-				-0.7
4,528,197	-				-0.1
4,528,197	-				-1.3
4,528,199	-				-1.3
4,528,199	-				+0.0
4,528,199	-				-0.7
4,528,210	+				+0.6
4,528,210	+				-1.7
4,528,324	+				+0.4
4,528,336	+				-0.5
4,528,336	+				-1.1
4,528,336	+				-0.0
4,528,337	-				-0.1
4,528,344	-				+0.6
4,528,372	+				+1.3
4,528,402	-		MIT1002_04038	0.11	-0.1
4,528,496	-		MIT1002_04038	0.15	+0.6
4,528,657	+		MIT1002_04038	0.22	-0.3
4,528,665	-		MIT1002_04038	0.23	-0.3
4,528,673	+		MIT1002_04038	0.23	+0.1
4,528,681	+		MIT1002_04038	0.23	+0.6
4,528,681	+		MIT1002_04038	0.23	+0.1
4,528,681	-		MIT1002_04038	0.23	+0.7
4,528,684	-		MIT1002_04038	0.24	-0.1
4,528,686	+		MIT1002_04038	0.24	+0.9
4,528,689	-		MIT1002_04038	0.24	+1.1
4,528,689	-		MIT1002_04038	0.24	-0.2
4,528,689	-		MIT1002_04038	0.24	+0.4
4,528,689	-		MIT1002_04038	0.24	+1.5
4,528,694	-		MIT1002_04038	0.24	-1.7
4,528,749	-		MIT1002_04038	0.26	+1.1
4,528,782	-		MIT1002_04038	0.28	+0.6
4,528,791	-		MIT1002_04038	0.28	-0.6
4,528,806	-		MIT1002_04038	0.29	-0.6
4,528,849	+		MIT1002_04038	0.31	-1.9
4,528,855	+		MIT1002_04038	0.31	+0.2
4,528,855	+		MIT1002_04038	0.31	-0.1
4,528,863	-		MIT1002_04038	0.31	-1.2
4,528,892	-		MIT1002_04038	0.33	-0.6
4,529,032	-		MIT1002_04038	0.39	+0.6
4,529,097	+		MIT1002_04038	0.42	+0.3
4,529,105	-		MIT1002_04038	0.42	+2.2
4,529,245	+		MIT1002_04038	0.48	-0.4
4,529,305	+		MIT1002_04038	0.51	+1.5
4,529,351	-		MIT1002_04038	0.53	+0.2
4,529,351	-		MIT1002_04038	0.53	+0.7
4,529,423	+		MIT1002_04038	0.56	+0.2
4,529,532	+		MIT1002_04038	0.61	-0.0
4,529,646	-		MIT1002_04038	0.66	+1.5
4,529,687	+		MIT1002_04038	0.67	+0.8
4,529,687	+		MIT1002_04038	0.67	-0.1
4,529,687	+		MIT1002_04038	0.67	-0.7
4,529,695	-		MIT1002_04038	0.68	-0.1
4,529,743	+		MIT1002_04038	0.70	+0.3
4,529,743	+		MIT1002_04038	0.70	-0.2
4,529,751	-		MIT1002_04038	0.70	-1.4
4,529,751	-		MIT1002_04038	0.70	+0.4
4,529,751	-		MIT1002_04038	0.70	-0.6
4,529,759	+		MIT1002_04038	0.71	+1.0
4,529,762	-		MIT1002_04038	0.71	+1.9
4,529,767	-		MIT1002_04038	0.71	+1.7
4,529,794	+		MIT1002_04038	0.72	+0.0
4,529,812	-		MIT1002_04038	0.73	+1.2
4,529,834	-		MIT1002_04038	0.74	+1.0
4,529,875	+		MIT1002_04038	0.76	+0.4
4,529,936	+		MIT1002_04038	0.78	-0.8
4,529,939	-		MIT1002_04038	0.78	-0.2
4,529,939	-		MIT1002_04038	0.78	+0.1
4,530,076	+		MIT1002_04038	0.84	+0.7
4,530,295	+				-0.5
4,530,304	+				+0.3
4,530,328	+				+0.9
4,530,336	-				+0.2
4,530,426	+				-0.3
4,530,550	-				-2.7
4,530,606	-				-0.5
4,530,655	+				-1.3