Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04015

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
4,501,689	-				+0.1
4,501,692	+				+0.5
4,501,699	-				-0.8
4,501,767	-				-1.8
4,501,781	-				-0.1
4,501,827	+				-1.0
4,501,827	+				+1.3
4,501,835	-		MIT1002_04014	0.10	+1.7
4,501,857	-		MIT1002_04014	0.13	-0.2
4,501,933	+		MIT1002_04014	0.21	+0.7
4,501,943	+		MIT1002_04014	0.22	-0.1
4,501,943	+		MIT1002_04014	0.22	+0.2
4,501,974	+		MIT1002_04014	0.25	+0.1
4,501,977	-		MIT1002_04014	0.26	-0.5
4,502,014	-		MIT1002_04014	0.30	-1.7
4,502,166	+		MIT1002_04014	0.46	+1.2
4,502,187	+		MIT1002_04014	0.49	+0.4
4,502,195	-		MIT1002_04014	0.49	+0.3
4,502,211	+		MIT1002_04014	0.51	+0.4
4,502,229	-		MIT1002_04014	0.53	-0.4
4,502,348	-		MIT1002_04014	0.66	+0.4
4,502,481	+		MIT1002_04014	0.81	-1.2
4,502,520	-		MIT1002_04014	0.85	+1.1
4,502,564	+		MIT1002_04014	0.90	+0.3
4,502,572	-				-0.2
4,502,600	+				-0.3
4,502,600	+				-0.1
4,502,600	+				-1.1
4,502,608	-				+1.3
4,502,630	-				+1.2
4,502,674	-				+0.3
4,502,736	+		MIT1002_04015	0.20	-1.6
4,502,736	+		MIT1002_04015	0.20	-0.3
4,502,736	+		MIT1002_04015	0.20	+0.9
4,502,744	-		MIT1002_04015	0.22	+0.0
4,502,753	+		MIT1002_04015	0.25	+1.2
4,502,847	+		MIT1002_04015	0.55	+0.2
4,502,945	-		MIT1002_04015	0.86	+1.0
4,502,969	-				-0.3
4,502,983	-				-0.2
4,503,012	-				+1.7
4,503,162	+				-2.4
4,503,185	+				+1.3
4,503,277	+		MIT1002_04016	0.13	-2.9
4,503,285	-		MIT1002_04016	0.14	-2.0
4,503,285	-		MIT1002_04016	0.14	+0.3
4,503,311	+		MIT1002_04016	0.18	-2.0
4,503,326	+		MIT1002_04016	0.20	-2.3
4,503,334	-		MIT1002_04016	0.20	-2.0
4,503,334	-		MIT1002_04016	0.20	-1.1
4,503,334	-		MIT1002_04016	0.20	-1.8
4,503,353	+		MIT1002_04016	0.23	-2.5
4,503,353	+		MIT1002_04016	0.23	-1.3
4,503,353	+		MIT1002_04016	0.23	-1.6
4,503,361	-		MIT1002_04016	0.24	-1.4
4,503,361	-		MIT1002_04016	0.24	-1.5
4,503,582	+		MIT1002_04016	0.51	-1.7
4,503,770	-		MIT1002_04016	0.74	-0.3
4,503,777	+		MIT1002_04016	0.75	-1.0
4,503,824	+		MIT1002_04016	0.81	-2.3
4,503,862	+		MIT1002_04016	0.86	-1.5
4,503,883	+		MIT1002_04016	0.88	-1.7
4,503,888	+		MIT1002_04016	0.89	-2.1
4,503,888	+		MIT1002_04016	0.89	-0.8
4,503,896	-		MIT1002_04016	0.90	-0.8
4,503,896	-		MIT1002_04016	0.90	-2.7
4,503,923	+				-1.8
4,503,925	+				-0.4
4,503,933	-				-1.0
4,503,933	-				-0.1
4,503,933	-				-0.1
4,503,933	-				-1.4
4,503,935	+				-2.4
4,503,943	-				-1.9
4,503,985	+				-1.7
4,503,985	+				-0.7