Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03976

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
4,461,876	-				-1.6
4,462,113	+		MIT1002_03975	0.36	-1.0
4,462,120	+		MIT1002_03975	0.36	-1.2
4,462,130	+		MIT1002_03975	0.37	-0.0
4,462,130	+		MIT1002_03975	0.37	-1.6
4,462,191	-		MIT1002_03975	0.44	-1.2
4,462,354	-		MIT1002_03975	0.62	-2.0
4,462,354	-		MIT1002_03975	0.62	-0.6
4,462,354	-		MIT1002_03975	0.62	-0.8
4,462,373	+		MIT1002_03975	0.64	+0.6
4,462,376	+		MIT1002_03975	0.64	+0.5
4,462,574	+		MIT1002_03975	0.86	+0.1
4,462,574	+		MIT1002_03975	0.86	+0.6
4,462,574	+		MIT1002_03975	0.86	+0.3
4,462,574	+		MIT1002_03975	0.86	-1.4
4,462,853	-				-1.7
4,463,061	+		MIT1002_03976	0.13	-0.0
4,463,069	-		MIT1002_03976	0.13	-3.2
4,463,148	-		MIT1002_03976	0.17	-2.8
4,463,215	-		MIT1002_03976	0.20	-0.0
4,463,447	+		MIT1002_03976	0.32	-1.2
4,463,467	-		MIT1002_03976	0.33	-0.0
4,463,515	-		MIT1002_03976	0.35	-1.2
4,463,568	-		MIT1002_03976	0.37	-1.5
4,463,660	-		MIT1002_03976	0.42	-0.6
4,463,683	-		MIT1002_03976	0.43	-0.6
4,463,803	+		MIT1002_03976	0.49	-0.6
4,463,803	+		MIT1002_03976	0.49	-1.0
4,463,811	-		MIT1002_03976	0.49	-1.3
4,463,811	-		MIT1002_03976	0.49	-0.6
4,463,812	+		MIT1002_03976	0.49	-1.2
4,464,126	+		MIT1002_03976	0.65	-6.2
4,464,200	+		MIT1002_03976	0.68	-0.3
4,464,286	+		MIT1002_03976	0.72	-1.8
4,464,286	+		MIT1002_03976	0.72	-1.0
4,464,286	+		MIT1002_03976	0.72	-0.6
4,464,294	-		MIT1002_03976	0.73	-0.6
4,464,377	-		MIT1002_03976	0.77	-0.3
4,464,561	-		MIT1002_03976	0.86	-1.7
4,464,868	+				-1.2
4,464,961	-				-1.0
4,464,961	-				-0.6
4,464,961	-				-1.5
4,464,971	-				-0.6
4,465,142	-		MIT1002_03977	0.18	-0.0
4,465,160	+		MIT1002_03977	0.20	-2.3
4,465,376	-		MIT1002_03977	0.33	-1.7
4,465,447	-		MIT1002_03977	0.38	-3.6
4,465,509	-		MIT1002_03977	0.42	-2.1
4,465,672	+		MIT1002_03977	0.52	-0.8
4,465,716	+		MIT1002_03977	0.55	-3.6
4,465,716	+		MIT1002_03977	0.55	-0.3
4,465,719	-		MIT1002_03977	0.55	-1.3
4,465,824	+		MIT1002_03977	0.62	-1.0
4,465,840	+		MIT1002_03977	0.63	-2.1
4,465,848	-		MIT1002_03977	0.64	-2.5