Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03935

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
4,417,783	-		MIT1002_03934	0.85	-1.5
4,417,787	+		MIT1002_03934	0.85	-0.3
4,417,787	+		MIT1002_03934	0.85	-0.0
4,417,787	+		MIT1002_03934	0.85	+0.3
4,417,787	+		MIT1002_03934	0.85	-0.2
4,417,787	+		MIT1002_03934	0.85	+1.1
4,417,787	+		MIT1002_03934	0.85	-0.6
4,417,792	+		MIT1002_03934	0.85	+0.7
4,417,795	-		MIT1002_03934	0.85	-0.0
4,417,795	-		MIT1002_03934	0.85	-1.0
4,417,795	-		MIT1002_03934	0.85	+1.0
4,417,795	-		MIT1002_03934	0.85	-0.1
4,417,795	-		MIT1002_03934	0.85	+1.0
4,417,815	-		MIT1002_03934	0.86	-2.7
4,417,927	-		MIT1002_03934	0.88	+1.5
4,417,927	-		MIT1002_03934	0.88	-1.7
4,418,034	+		MIT1002_03934	0.89	+0.6
4,418,063	-		MIT1002_03934	0.90	-0.1
4,418,071	+		MIT1002_03934	0.90	+0.9
4,418,079	-				-1.1
4,418,079	-				-0.4
4,418,079	-				-0.8
4,418,141	-				+0.7
4,418,204	+				+0.8
4,418,225	-				+0.6
4,418,229	-				-0.3
4,418,239	-				+1.1
4,418,239	-				-2.1
4,418,361	+				-0.9
4,418,401	-				-0.4
4,418,451	+				+0.0
4,418,501	+				+0.0
4,418,509	-				+1.0
4,418,509	-				+0.1
4,418,533	-				-0.0
4,418,592	+				-0.0
4,418,620	-				-0.7
4,418,653	-				+0.9
4,418,653	-				-0.2
4,418,752	+				-0.8
4,420,822	-				+1.7
4,420,892	-				+0.2
4,420,892	-				+0.4
4,420,985	+				-0.9
4,420,993	-				+1.0
4,420,995	+				-0.7
4,421,056	-				+2.4
4,421,060	+				+0.4
4,421,067	+				+0.2
4,421,067	+				+0.0
4,421,075	-		MIT1002_03937	0.11	+0.1
4,421,075	-		MIT1002_03937	0.11	+0.3
4,421,077	+		MIT1002_03937	0.11	+0.9
4,421,083	-		MIT1002_03937	0.12	+1.6
4,421,097	-		MIT1002_03937	0.15	+0.1
4,421,110	+		MIT1002_03937	0.18	-0.8
4,421,136	+		MIT1002_03937	0.22	-1.2
4,421,136	+		MIT1002_03937	0.22	+1.2
4,421,201	-		MIT1002_03937	0.35	+0.3
4,421,213	-		MIT1002_03937	0.37	-1.0
4,421,233	-		MIT1002_03937	0.41	-0.4
4,421,322	-		MIT1002_03937	0.58	+0.1
4,421,387	+		MIT1002_03937	0.70	-0.9
4,421,393	-		MIT1002_03937	0.71	-0.7