Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03838

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
4,294,233	+		MIT1002_03837	0.73	+0.1
4,294,237	-		MIT1002_03837	0.74	+0.3
4,294,267	+		MIT1002_03837	0.75	+0.7
4,294,276	-		MIT1002_03837	0.75	+0.7
4,294,305	+		MIT1002_03837	0.76	+0.4
4,294,351	-		MIT1002_03837	0.77	-1.8
4,294,351	-		MIT1002_03837	0.77	+1.1
4,294,366	+		MIT1002_03837	0.78	+0.1
4,294,397	-		MIT1002_03837	0.79	-2.0
4,294,422	+		MIT1002_03837	0.80	-0.0
4,294,460	+		MIT1002_03837	0.81	-0.1
4,294,468	-		MIT1002_03837	0.81	-0.6
4,294,468	-		MIT1002_03837	0.81	-0.7
4,294,470	+		MIT1002_03837	0.81	+0.0
4,294,470	+		MIT1002_03837	0.81	-0.6
4,294,497	-		MIT1002_03837	0.82	+0.7
4,294,497	-		MIT1002_03837	0.82	+0.5
4,294,522	+		MIT1002_03837	0.83	-1.4
4,294,525	+		MIT1002_03837	0.83	-0.0
4,294,525	+		MIT1002_03837	0.83	+0.2
4,294,532	+		MIT1002_03837	0.84	-0.3
4,294,567	+		MIT1002_03837	0.85	-2.3
4,294,567	+		MIT1002_03837	0.85	+0.8
4,294,567	+		MIT1002_03837	0.85	-0.1
4,294,624	+		MIT1002_03837	0.87	+0.6
4,294,635	+		MIT1002_03837	0.87	-0.3
4,294,668	-		MIT1002_03837	0.88	+0.0
4,294,776	-				+0.4
4,294,787	-				-0.5
4,294,794	-				-0.4
4,294,845	-				+0.6
4,294,850	-				-0.7
4,294,880	-				-1.0
4,294,903	-				-1.4
4,294,916	+				+0.6
4,294,981	-				+0.2
4,295,023	-				+1.2
4,295,050	-				+1.2
4,295,077	-				-0.3
4,295,120	+				+1.7
4,295,128	-				-0.0
4,295,128	-				+0.3
4,295,160	-				+1.2
4,295,166	+				+0.0
4,295,262	+				+1.1
4,295,276	+				-0.6
4,295,276	+				-0.2
4,295,284	-				+0.4
4,295,299	-				-0.3
4,295,328	+				-2.5
4,295,334	-				+1.0
4,295,344	+		MIT1002_03838	0.10	+0.4
4,295,352	-		MIT1002_03838	0.11	-1.8
4,295,377	+		MIT1002_03838	0.12	+1.0
4,295,397	+		MIT1002_03838	0.13	-1.8
4,295,405	-		MIT1002_03838	0.13	-3.2
4,295,473	-		MIT1002_03838	0.17	-0.2
4,295,479	+		MIT1002_03838	0.17	-1.0
4,295,487	-		MIT1002_03838	0.18	+0.2
4,295,487	-		MIT1002_03838	0.18	-0.6
4,295,487	-		MIT1002_03838	0.18	+0.4
4,295,515	+		MIT1002_03838	0.19	+0.7
4,295,525	+		MIT1002_03838	0.20	-0.8
4,295,533	-		MIT1002_03838	0.20	-0.4
4,295,536	+		MIT1002_03838	0.20	-0.7
4,295,542	-		MIT1002_03838	0.21	-0.9
4,295,542	-		MIT1002_03838	0.21	-0.3
4,295,576	-		MIT1002_03838	0.23	+0.7
4,295,622	+		MIT1002_03838	0.25	+0.2
4,295,622	+		MIT1002_03838	0.25	-0.1
4,295,632	+		MIT1002_03838	0.25	+1.2
4,295,641	-		MIT1002_03838	0.26	-0.8
4,295,690	+		MIT1002_03838	0.29	+0.6
4,295,702	+		MIT1002_03838	0.29	-1.0
4,295,750	-		MIT1002_03838	0.32	+0.3
4,295,820	-		MIT1002_03838	0.35	-0.3
4,295,845	+		MIT1002_03838	0.37	+0.1
4,295,875	-		MIT1002_03838	0.38	-0.9
4,295,883	-		MIT1002_03838	0.39	+0.1
4,295,896	+		MIT1002_03838	0.39	+1.4
4,296,003	-		MIT1002_03838	0.45	-0.5
4,296,083	-		MIT1002_03838	0.49	-0.7
4,296,099	+		MIT1002_03838	0.50	+0.1
4,296,107	-		MIT1002_03838	0.51	-1.1
4,296,107	-		MIT1002_03838	0.51	+0.3
4,296,151	+		MIT1002_03838	0.53	-0.6
4,296,176	-		MIT1002_03838	0.54	-0.7
4,296,178	+		MIT1002_03838	0.54	-0.4
4,296,193	+		MIT1002_03838	0.55	+0.4
4,296,218	+		MIT1002_03838	0.57	+0.4
4,296,243	+		MIT1002_03838	0.58	-0.6
4,296,262	+		MIT1002_03838	0.59	-0.3
4,296,289	-		MIT1002_03838	0.60	-0.8
4,296,468	-		MIT1002_03838	0.70	-0.8
4,296,492	-		MIT1002_03838	0.71	-1.4
4,296,506	-		MIT1002_03838	0.72	-0.7
4,296,506	-		MIT1002_03838	0.72	+0.2
4,296,508	+		MIT1002_03838	0.72	+1.7
4,296,561	-		MIT1002_03838	0.75	-1.5
4,296,601	-		MIT1002_03838	0.77	-0.5
4,296,601	-		MIT1002_03838	0.77	-1.6
4,296,625	-		MIT1002_03838	0.78	-0.4
4,296,625	-		MIT1002_03838	0.78	+0.8
4,296,649	+		MIT1002_03838	0.79	+1.1
4,296,717	+		MIT1002_03838	0.83	+0.4
4,296,782	+		MIT1002_03838	0.87	+0.1
4,296,790	-		MIT1002_03838	0.87	+0.1
4,296,796	+		MIT1002_03838	0.87	-1.3
4,296,919	+				-1.5
4,296,919	+				+0.3
4,296,924	+				-0.5
4,297,076	-				+0.3
4,297,078	+				+0.4
4,297,078	+				+0.0
4,297,078	+				-0.7
4,297,078	-				-1.0
4,297,078	-				+0.9
4,297,086	-				+0.2
4,297,086	-				+3.0
4,297,086	-				-0.8
4,297,093	+				-0.1
4,297,095	+				-1.2
4,297,095	+				-1.7
4,297,103	-				-0.4
4,297,105	+				+0.9
4,297,322	+		MIT1002_03839	0.10	-1.0
4,297,335	-		MIT1002_03839	0.11	-0.9
4,297,342	-		MIT1002_03839	0.12	-0.3
4,297,362	+		MIT1002_03839	0.13	+0.1
4,297,362	+		MIT1002_03839	0.13	+0.4
4,297,373	+		MIT1002_03839	0.14	+1.4
4,297,462	+		MIT1002_03839	0.20	-0.4
4,297,462	+		MIT1002_03839	0.20	+0.1
4,297,476	-		MIT1002_03839	0.21	-0.3
4,297,479	+		MIT1002_03839	0.21	+0.3
4,297,497	+		MIT1002_03839	0.22	-0.2
4,297,552	+		MIT1002_03839	0.26	+0.0
4,297,686	-		MIT1002_03839	0.35	-0.1
4,297,755	+		MIT1002_03839	0.39	+0.3
4,297,807	+		MIT1002_03839	0.43	+0.4
4,297,808	+		MIT1002_03839	0.43	+0.6
4,297,808	+		MIT1002_03839	0.43	+0.2
4,297,816	-		MIT1002_03839	0.43	+2.0
4,297,818	+		MIT1002_03839	0.44	-0.3
4,297,826	-		MIT1002_03839	0.44	+0.1
4,297,906	-		MIT1002_03839	0.50	-1.3
4,297,925	-		MIT1002_03839	0.51	-0.4
4,297,933	-		MIT1002_03839	0.51	-1.2
4,297,939	-		MIT1002_03839	0.52	+0.7
4,298,002	-		MIT1002_03839	0.56	+0.4
4,298,023	+		MIT1002_03839	0.57	+0.1