Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03690

Experiment: monoculture; Experiment A, time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_03689 and MIT1002_03690 are separated by 239 nucleotidesMIT1002_03690 and MIT1002_03691 are separated by 73 nucleotides MIT1002_03689: MIT1002_03689 - Sugar fermentation stimulation protein A, at 4,120,791 to 4,121,507 _03689 MIT1002_03690: MIT1002_03690 - DnaK suppressor protein, at 4,121,747 to 4,122,196 _03690 MIT1002_03691: MIT1002_03691 - Glutamyl-Q tRNA(Asp) synthetase, at 4,122,270 to 4,123,193 _03691 Position (kb) 4121 4122 4123Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 4120.937 kb on - strand, within MIT1002_03689at 4120.990 kb on - strand, within MIT1002_03689at 4120.992 kb on - strand, within MIT1002_03689at 4121.188 kb on + strand, within MIT1002_03689at 4121.207 kb on + strand, within MIT1002_03689at 4121.241 kb on + strand, within MIT1002_03689at 4121.251 kb on - strand, within MIT1002_03689at 4121.282 kb on - strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.284 kb on + strand, within MIT1002_03689at 4121.292 kb on - strand, within MIT1002_03689at 4121.292 kb on - strand, within MIT1002_03689at 4121.292 kb on - strand, within MIT1002_03689at 4121.292 kb on - strand, within MIT1002_03689at 4121.328 kb on + strand, within MIT1002_03689at 4121.328 kb on + strand, within MIT1002_03689at 4121.336 kb on - strand, within MIT1002_03689at 4121.336 kb on - strand, within MIT1002_03689at 4121.338 kb on + strand, within MIT1002_03689at 4121.338 kb on + strand, within MIT1002_03689at 4121.346 kb on - strand, within MIT1002_03689at 4121.348 kb on - strand, within MIT1002_03689at 4121.350 kb on + strand, within MIT1002_03689at 4121.422 kb on + strand, within MIT1002_03689at 4121.710 kb on + strandat 4121.710 kb on + strandat 4121.718 kb on - strandat 4121.729 kb on + strandat 4121.729 kb on + strandat 4121.737 kb on - strandat 4121.737 kb on - strandat 4121.780 kb on - strandat 4121.796 kb on + strand, within MIT1002_03690at 4121.804 kb on - strand, within MIT1002_03690at 4121.828 kb on + strand, within MIT1002_03690at 4121.830 kb on + strand, within MIT1002_03690at 4121.830 kb on + strand, within MIT1002_03690at 4121.830 kb on + strand, within MIT1002_03690at 4121.836 kb on - strand, within MIT1002_03690at 4121.838 kb on - strand, within MIT1002_03690at 4121.838 kb on - strand, within MIT1002_03690at 4121.847 kb on + strand, within MIT1002_03690at 4121.852 kb on + strand, within MIT1002_03690at 4121.866 kb on + strand, within MIT1002_03690at 4121.869 kb on + strand, within MIT1002_03690at 4121.869 kb on + strand, within MIT1002_03690at 4121.877 kb on - strand, within MIT1002_03690at 4121.877 kb on - strand, within MIT1002_03690at 4121.908 kb on + strand, within MIT1002_03690at 4121.908 kb on - strand, within MIT1002_03690at 4121.913 kb on + strand, within MIT1002_03690at 4121.931 kb on - strand, within MIT1002_03690at 4121.931 kb on - strand, within MIT1002_03690at 4121.954 kb on + strand, within MIT1002_03690at 4121.954 kb on + strand, within MIT1002_03690at 4121.962 kb on - strand, within MIT1002_03690at 4121.962 kb on - strand, within MIT1002_03690at 4121.962 kb on - strand, within MIT1002_03690at 4121.988 kb on + strand, within MIT1002_03690at 4121.991 kb on - strand, within MIT1002_03690at 4121.996 kb on - strand, within MIT1002_03690at 4121.998 kb on + strand, within MIT1002_03690at 4122.006 kb on - strand, within MIT1002_03690at 4122.006 kb on - strand, within MIT1002_03690at 4122.157 kb on + strandat 4122.159 kb on - strandat 4122.198 kb on - strandat 4122.216 kb on - strandat 4122.228 kb on + strandat 4122.278 kb on + strandat 4122.286 kb on - strandat 4122.286 kb on - strandat 4122.293 kb on - strandat 4122.310 kb on - strandat 4122.371 kb on - strand, within MIT1002_03691at 4122.421 kb on + strand, within MIT1002_03691at 4122.421 kb on + strand, within MIT1002_03691at 4122.421 kb on + strand, within MIT1002_03691at 4122.421 kb on + strand, within MIT1002_03691at 4122.421 kb on + strand, within MIT1002_03691at 4122.430 kb on - strand, within MIT1002_03691at 4122.435 kb on + strand, within MIT1002_03691at 4122.437 kb on - strand, within MIT1002_03691at 4122.437 kb on - strand, within MIT1002_03691at 4122.443 kb on - strand, within MIT1002_03691at 4122.449 kb on - strand, within MIT1002_03691at 4122.473 kb on + strand, within MIT1002_03691at 4122.473 kb on + strand, within MIT1002_03691at 4122.587 kb on + strand, within MIT1002_03691at 4122.604 kb on + strand, within MIT1002_03691at 4122.606 kb on + strand, within MIT1002_03691at 4122.606 kb on + strand, within MIT1002_03691at 4122.639 kb on + strand, within MIT1002_03691at 4122.639 kb on - strand, within MIT1002_03691at 4122.641 kb on + strand, within MIT1002_03691at 4122.648 kb on + strand, within MIT1002_03691at 4122.649 kb on - strand, within MIT1002_03691at 4122.649 kb on - strand, within MIT1002_03691at 4122.653 kb on + strand, within MIT1002_03691at 4122.656 kb on - strand, within MIT1002_03691at 4122.656 kb on - strand, within MIT1002_03691at 4122.661 kb on - strand, within MIT1002_03691at 4122.661 kb on - strand, within MIT1002_03691at 4122.661 kb on - strand, within MIT1002_03691at 4122.661 kb on - strand, within MIT1002_03691at 4122.666 kb on - strand, within MIT1002_03691at 4122.792 kb on - strand, within MIT1002_03691at 4122.850 kb on - strand, within MIT1002_03691at 4122.877 kb on - strand, within MIT1002_03691at 4122.884 kb on - strand, within MIT1002_03691at 4122.884 kb on - strand, within MIT1002_03691at 4122.889 kb on + strand, within MIT1002_03691at 4122.891 kb on + strand, within MIT1002_03691at 4122.900 kb on + strand, within MIT1002_03691at 4123.019 kb on + strand, within MIT1002_03691at 4123.029 kb on + strand, within MIT1002_03691at 4123.097 kb on - strand, within MIT1002_03691at 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.185 kb on + strandat 4123.187 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
remove
4,120,937 - MIT1002_03689 0.20 -0.7
4,120,990 - MIT1002_03689 0.28 -0.7
4,120,992 - MIT1002_03689 0.28 +0.5
4,121,188 + MIT1002_03689 0.55 +0.6
4,121,207 + MIT1002_03689 0.58 -0.9
4,121,241 + MIT1002_03689 0.63 -0.0
4,121,251 - MIT1002_03689 0.64 -0.8
4,121,282 - MIT1002_03689 0.68 +0.1
4,121,284 + MIT1002_03689 0.69 -0.0
4,121,284 + MIT1002_03689 0.69 -0.5
4,121,284 + MIT1002_03689 0.69 -0.4
4,121,284 + MIT1002_03689 0.69 -0.4
4,121,284 + MIT1002_03689 0.69 +1.2
4,121,284 + MIT1002_03689 0.69 -1.8
4,121,284 + MIT1002_03689 0.69 +1.3
4,121,284 + MIT1002_03689 0.69 -0.4
4,121,292 - MIT1002_03689 0.70 +0.4
4,121,292 - MIT1002_03689 0.70 +0.7
4,121,292 - MIT1002_03689 0.70 +0.5
4,121,292 - MIT1002_03689 0.70 -0.6
4,121,328 + MIT1002_03689 0.75 +0.1
4,121,328 + MIT1002_03689 0.75 -0.4
4,121,336 - MIT1002_03689 0.76 +1.1
4,121,336 - MIT1002_03689 0.76 +0.6
4,121,338 + MIT1002_03689 0.76 +0.2
4,121,338 + MIT1002_03689 0.76 -0.1
4,121,346 - MIT1002_03689 0.77 -2.0
4,121,348 - MIT1002_03689 0.78 +1.2
4,121,350 + MIT1002_03689 0.78 -1.2
4,121,422 + MIT1002_03689 0.88 +0.5
4,121,710 + +2.3
4,121,710 + -1.9
4,121,718 - -2.9
4,121,729 + +1.1
4,121,729 + -0.6
4,121,737 - -2.4
4,121,737 - -4.2
4,121,780 - -0.8
4,121,796 + MIT1002_03690 0.11 -0.6
4,121,804 - MIT1002_03690 0.13 -5.5
4,121,828 + MIT1002_03690 0.18 -1.4
4,121,830 + MIT1002_03690 0.18 -5.3
4,121,830 + MIT1002_03690 0.18 -3.4
4,121,830 + MIT1002_03690 0.18 -2.6
4,121,836 - MIT1002_03690 0.20 -4.8
4,121,838 - MIT1002_03690 0.20 -3.2
4,121,838 - MIT1002_03690 0.20 -2.8
4,121,847 + MIT1002_03690 0.22 -4.6
4,121,852 + MIT1002_03690 0.23 -4.2
4,121,866 + MIT1002_03690 0.26 -6.0
4,121,869 + MIT1002_03690 0.27 -1.4
4,121,869 + MIT1002_03690 0.27 -5.7
4,121,877 - MIT1002_03690 0.29 -2.9
4,121,877 - MIT1002_03690 0.29 -5.8
4,121,908 + MIT1002_03690 0.36 -3.4
4,121,908 - MIT1002_03690 0.36 -4.3
4,121,913 + MIT1002_03690 0.37 -3.5
4,121,931 - MIT1002_03690 0.41 -2.6
4,121,931 - MIT1002_03690 0.41 -3.2
4,121,954 + MIT1002_03690 0.46 -5.8
4,121,954 + MIT1002_03690 0.46 -3.4
4,121,962 - MIT1002_03690 0.48 -4.3
4,121,962 - MIT1002_03690 0.48 -4.8
4,121,962 - MIT1002_03690 0.48 -5.1
4,121,988 + MIT1002_03690 0.54 -2.0
4,121,991 - MIT1002_03690 0.54 -6.0
4,121,996 - MIT1002_03690 0.55 -2.8
4,121,998 + MIT1002_03690 0.56 -4.7
4,122,006 - MIT1002_03690 0.58 -5.1
4,122,006 - MIT1002_03690 0.58 -4.4
4,122,157 + -4.6
4,122,159 - -3.4
4,122,198 - +0.3
4,122,216 - +0.1
4,122,228 + -0.3
4,122,278 + +0.1
4,122,286 - +1.3
4,122,286 - +0.8
4,122,293 - +0.2
4,122,310 - -0.1
4,122,371 - MIT1002_03691 0.11 -3.2
4,122,421 + MIT1002_03691 0.16 +0.2
4,122,421 + MIT1002_03691 0.16 +1.1
4,122,421 + MIT1002_03691 0.16 +1.0
4,122,421 + MIT1002_03691 0.16 -1.4
4,122,421 + MIT1002_03691 0.16 -2.4
4,122,430 - MIT1002_03691 0.17 -1.6
4,122,435 + MIT1002_03691 0.18 -0.2
4,122,437 - MIT1002_03691 0.18 -1.4
4,122,437 - MIT1002_03691 0.18 +0.9
4,122,443 - MIT1002_03691 0.19 +0.1
4,122,449 - MIT1002_03691 0.19 +0.8
4,122,473 + MIT1002_03691 0.22 -0.1
4,122,473 + MIT1002_03691 0.22 -0.1
4,122,587 + MIT1002_03691 0.34 +0.4
4,122,604 + MIT1002_03691 0.36 -0.0
4,122,606 + MIT1002_03691 0.36 -1.3
4,122,606 + MIT1002_03691 0.36 -0.1
4,122,639 + MIT1002_03691 0.40 +0.9
4,122,639 - MIT1002_03691 0.40 -1.9
4,122,641 + MIT1002_03691 0.40 -0.0
4,122,648 + MIT1002_03691 0.41 +0.7
4,122,649 - MIT1002_03691 0.41 -0.5
4,122,649 - MIT1002_03691 0.41 +0.0
4,122,653 + MIT1002_03691 0.41 -0.7
4,122,656 - MIT1002_03691 0.42 -1.3
4,122,656 - MIT1002_03691 0.42 -1.9
4,122,661 - MIT1002_03691 0.42 +2.0
4,122,661 - MIT1002_03691 0.42 -0.3
4,122,661 - MIT1002_03691 0.42 -1.5
4,122,661 - MIT1002_03691 0.42 -1.2
4,122,666 - MIT1002_03691 0.43 +0.9
4,122,792 - MIT1002_03691 0.56 +0.9
4,122,850 - MIT1002_03691 0.63 +0.9
4,122,877 - MIT1002_03691 0.66 +0.3
4,122,884 - MIT1002_03691 0.66 -0.7
4,122,884 - MIT1002_03691 0.66 -0.4
4,122,889 + MIT1002_03691 0.67 +0.9
4,122,891 + MIT1002_03691 0.67 +0.1
4,122,900 + MIT1002_03691 0.68 +0.5
4,123,019 + MIT1002_03691 0.81 +1.1
4,123,029 + MIT1002_03691 0.82 +0.4
4,123,097 - MIT1002_03691 0.90 -1.6
4,123,185 + -0.5
4,123,185 + -0.1
4,123,185 + +0.5
4,123,185 + +1.6
4,123,185 + -1.0
4,123,185 + -1.0
4,123,185 + +0.3
4,123,185 + -0.2
4,123,185 + +0.6
4,123,185 + -1.6
4,123,185 + -0.7
4,123,187 + +0.4

Or see this region's nucleotide sequence