Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03656

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
4,089,808	+		MIT1002_03653	0.86	+0.8
4,089,816	-		MIT1002_03653	0.86	+0.6
4,089,840	+		MIT1002_03653	0.87	-1.2
4,089,848	-		MIT1002_03653	0.88	-0.7
4,089,935	-				-0.8
4,089,967	+				-0.3
4,089,975	-				+1.4
4,090,009	+				+0.4
4,090,036	+				+0.7
4,090,044	-				+0.0
4,090,044	-				-1.2
4,090,044	-				-0.5
4,090,044	-				-1.2
4,090,066	+				+0.0
4,090,067	-				+1.3
4,090,074	-				-1.5
4,090,082	+				+0.4
4,090,158	+		MIT1002_03654	0.10	-0.3
4,090,199	+		MIT1002_03654	0.23	+0.3
4,090,199	+		MIT1002_03654	0.23	+0.3
4,090,207	+		MIT1002_03654	0.26	+0.7
4,090,212	+		MIT1002_03654	0.28	+0.0
4,090,215	-		MIT1002_03654	0.29	-0.5
4,090,217	+		MIT1002_03654	0.29	-0.3
4,090,217	+		MIT1002_03654	0.29	+0.4
4,090,220	-		MIT1002_03654	0.30	+2.1
4,090,225	-		MIT1002_03654	0.32	-2.7
4,090,252	+		MIT1002_03654	0.40	-0.3
4,090,387	-		MIT1002_03654	0.84	+0.6
4,090,423	-				-0.2
4,090,439	+				+0.5
4,090,440	-				+2.3
4,090,457	-				+0.2
4,090,618	+		MIT1002_03655	0.64	+0.1
4,090,620	-		MIT1002_03655	0.65	+0.7
4,090,620	-		MIT1002_03655	0.65	-0.2
4,090,626	-		MIT1002_03655	0.68	-1.0
4,090,626	-		MIT1002_03655	0.68	+0.2
4,090,626	-		MIT1002_03655	0.68	+0.4
4,090,715	+				-0.5
4,090,732	-				+0.2
4,090,732	-				-1.1
4,090,732	-				-0.0
4,090,749	+				-0.1
4,090,766	-				+0.5
4,090,767	+				+1.0
4,090,768	-				-0.2
4,090,814	+				+1.3
4,090,814	+				+0.7
4,090,814	+				-0.0
4,090,814	+				-0.1
4,090,822	-				+0.2
4,090,822	-				+1.2
4,090,822	-				-1.0
4,090,822	-				+0.3
4,090,822	-				+1.2
4,090,822	-				-0.7
4,090,824	-				-1.2
4,090,824	-				-0.9
4,090,824	-				-0.3
4,090,867	-				+0.3
4,090,961	-		MIT1002_03656	0.16	-1.7
4,090,990	+		MIT1002_03656	0.19	+0.1
4,091,003	-		MIT1002_03656	0.20	+1.2
4,091,043	-		MIT1002_03656	0.24	+1.3
4,091,202	+		MIT1002_03656	0.40	+0.7
4,091,248	-		MIT1002_03656	0.45	-1.6
4,091,248	-		MIT1002_03656	0.45	+0.1
4,091,254	+		MIT1002_03656	0.45	+2.2
4,091,254	+		MIT1002_03656	0.45	-0.4
4,091,254	+		MIT1002_03656	0.45	+1.2
4,091,262	-		MIT1002_03656	0.46	-0.8
4,091,262	-		MIT1002_03656	0.46	+1.4
4,091,262	-		MIT1002_03656	0.46	-0.0
4,091,262	-		MIT1002_03656	0.46	+1.0
4,091,294	-		MIT1002_03656	0.49	+1.7
4,091,378	+		MIT1002_03656	0.57	+1.0
4,091,412	-		MIT1002_03656	0.61	-0.0
4,091,469	-		MIT1002_03656	0.67	-0.0
4,091,505	+		MIT1002_03656	0.70	+0.3
4,091,505	+		MIT1002_03656	0.70	-0.6
4,091,513	-		MIT1002_03656	0.71	+0.3
4,091,513	-		MIT1002_03656	0.71	+0.6
4,091,513	-		MIT1002_03656	0.71	-0.6
4,091,525	-		MIT1002_03656	0.72	+2.0
4,091,530	-		MIT1002_03656	0.73	-0.7
4,091,530	-		MIT1002_03656	0.73	-1.8
4,091,575	-		MIT1002_03656	0.77	+0.3
4,091,603	-		MIT1002_03656	0.80	-0.4
4,091,603	-		MIT1002_03656	0.80	-1.8
4,091,603	-		MIT1002_03656	0.80	+0.8
4,091,603	-		MIT1002_03656	0.80	+0.5
4,091,603	-		MIT1002_03656	0.80	-2.6
4,091,603	-		MIT1002_03656	0.80	+0.5
4,091,610	+		MIT1002_03656	0.81	+1.0
4,091,642	+		MIT1002_03656	0.84	+0.8
4,091,650	-		MIT1002_03656	0.85	+0.6
4,091,650	-		MIT1002_03656	0.85	+0.1
4,091,651	+		MIT1002_03656	0.85	-0.1
4,091,653	+		MIT1002_03656	0.85	-0.2
4,091,682	-		MIT1002_03656	0.88	-0.9
4,091,682	-		MIT1002_03656	0.88	-0.4
4,091,718	-				-0.3
4,091,724	-				-2.0
4,091,724	-				+0.5
4,091,724	-				-1.0
4,091,724	-				-0.7
4,091,751	-				+0.3
4,091,753	+				-0.0
4,091,796	-				+0.6
4,091,804	-				+0.2
4,091,857	+				+2.5
4,091,874	-				-0.6
4,092,018	+		MIT1002_03657	0.24	-0.2
4,092,026	-		MIT1002_03657	0.27	+1.0
4,092,026	-		MIT1002_03657	0.27	-0.8
4,092,036	-		MIT1002_03657	0.30	-0.0
4,092,091	-		MIT1002_03657	0.46	-0.4
4,092,101	-		MIT1002_03657	0.49	-0.6
4,092,182	+		MIT1002_03657	0.72	-0.8
4,092,212	+		MIT1002_03657	0.81	-0.6
4,092,299	-				-2.7
4,092,299	-				-0.8
4,092,357	-		MIT1002_03658	0.16	-2.2
4,092,357	-		MIT1002_03658	0.16	-0.0
4,092,364	+		MIT1002_03658	0.18	-2.3
4,092,520	+		MIT1002_03658	0.53	-0.8
4,092,520	+		MIT1002_03658	0.53	-0.8
4,092,569	+		MIT1002_03658	0.64	-1.5
4,092,588	-		MIT1002_03658	0.68	-1.2
4,092,589	+		MIT1002_03658	0.68	-1.2
4,092,589	+		MIT1002_03658	0.68	-1.5
4,092,605	+		MIT1002_03658	0.72	+1.3
4,092,615	+		MIT1002_03658	0.74	-0.0