Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03575

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
3,999,605	+		MIT1002_03572	0.76	-0.5
3,999,605	+		MIT1002_03572	0.76	-0.3
3,999,605	+		MIT1002_03572	0.76	-0.1
3,999,605	+		MIT1002_03572	0.76	+0.4
3,999,605	+		MIT1002_03572	0.76	+1.0
3,999,613	-		MIT1002_03572	0.78	+0.4
3,999,613	-		MIT1002_03572	0.78	-0.1
3,999,613	-		MIT1002_03572	0.78	+0.7
3,999,707	+				+0.5
3,999,753	+				+0.9
3,999,787	-				+1.4
4,000,852	+		MIT1002_03575	0.23	+0.7
4,000,852	+		MIT1002_03575	0.23	+2.7
4,000,869	+		MIT1002_03575	0.24	-1.9
4,001,259	-		MIT1002_03575	0.50	+1.4
4,001,265	+		MIT1002_03575	0.51	+0.0
4,001,362	-		MIT1002_03575	0.58	-0.1
4,001,682	-		MIT1002_03575	0.79	+0.5
4,001,682	-		MIT1002_03575	0.79	+0.4
4,001,682	-		MIT1002_03575	0.79	+0.9
4,001,763	+		MIT1002_03575	0.85	-1.1
4,001,763	+		MIT1002_03575	0.85	+0.4
4,001,771	-		MIT1002_03575	0.85	-0.0
4,001,771	-		MIT1002_03575	0.85	-0.6
4,001,810	-		MIT1002_03575	0.88	+0.4
4,002,359	+				-0.2
4,002,364	+				-1.0
4,002,407	-				+0.3
4,002,421	+				-0.5
4,002,429	+				+0.3
4,002,429	-				-0.8
4,002,437	-				-1.1
4,002,467	+				-0.2
4,002,565	+		MIT1002_03577	0.13	+0.6
4,002,684	+		MIT1002_03577	0.21	-0.7
4,002,692	-		MIT1002_03577	0.22	+0.0
4,002,711	-		MIT1002_03577	0.23	-0.1
4,002,713	-		MIT1002_03577	0.23	+0.3
4,002,718	+		MIT1002_03577	0.24	+1.5
4,002,721	-		MIT1002_03577	0.24	+0.3
4,002,721	-		MIT1002_03577	0.24	-0.5
4,002,742	-		MIT1002_03577	0.25	-0.0
4,002,764	-		MIT1002_03577	0.27	-0.0
4,002,764	-		MIT1002_03577	0.27	+0.0
4,002,776	-		MIT1002_03577	0.28	-0.6
4,002,832	+		MIT1002_03577	0.31	-0.3
4,002,885	+		MIT1002_03577	0.35	+1.2
4,002,885	+		MIT1002_03577	0.35	-0.1
4,002,924	+		MIT1002_03577	0.38	+0.4
4,002,924	-		MIT1002_03577	0.38	-2.1