Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03476

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
3,883,732	+		MIT1002_03475	0.19	+0.3
3,883,795	-		MIT1002_03475	0.25	-1.2
3,883,854	+		MIT1002_03475	0.31	+0.0
3,883,857	+		MIT1002_03475	0.31	-1.8
3,883,865	-		MIT1002_03475	0.32	-1.2
3,884,046	+		MIT1002_03475	0.50	-0.3
3,884,056	+		MIT1002_03475	0.51	+0.2
3,884,056	+		MIT1002_03475	0.51	-2.3
3,884,164	+		MIT1002_03475	0.62	-0.5
3,884,218	+		MIT1002_03475	0.67	-0.8
3,884,229	+		MIT1002_03475	0.68	+0.5
3,884,237	-		MIT1002_03475	0.69	-2.3
3,884,237	-		MIT1002_03475	0.69	+0.6
3,884,323	-		MIT1002_03475	0.78	+0.8
3,884,373	-		MIT1002_03475	0.83	-0.6
3,884,408	+		MIT1002_03475	0.86	+1.3
3,884,408	+		MIT1002_03475	0.86	+0.5
3,884,408	+		MIT1002_03475	0.86	+0.9
3,884,408	+		MIT1002_03475	0.86	-0.5
3,884,408	+		MIT1002_03475	0.86	+0.1
3,884,408	+		MIT1002_03475	0.86	-1.1
3,884,411	-		MIT1002_03475	0.86	-1.2
3,884,416	-		MIT1002_03475	0.87	-1.2
3,884,416	-		MIT1002_03475	0.87	-0.3
3,884,416	-		MIT1002_03475	0.87	-1.4
3,884,416	-		MIT1002_03475	0.87	-0.5
3,884,416	-		MIT1002_03475	0.87	-0.5
3,884,416	-		MIT1002_03475	0.87	-0.1
3,884,432	+		MIT1002_03475	0.88	+1.0
3,884,442	-		MIT1002_03475	0.89	+0.5
3,884,510	+				+0.9
3,884,518	-				-0.1
3,884,518	-				+0.2
3,884,518	-				+0.9
3,884,546	+				+0.9
3,884,606	+				+1.2
3,884,612	-				-0.6
3,884,670	+				-0.2
3,884,693	-				-0.4
3,884,703	+				+0.5
3,884,737	+				+0.9
3,884,737	+				+0.9
3,884,745	-				+1.0
3,884,747	-				-0.1
3,884,863	-		MIT1002_03476	0.15	+0.1
3,884,863	-		MIT1002_03476	0.15	+0.2
3,884,988	+		MIT1002_03476	0.29	+0.0
3,885,063	+		MIT1002_03476	0.38	+1.0
3,885,070	+		MIT1002_03476	0.38	+0.5
3,885,070	+		MIT1002_03476	0.38	-0.5
3,885,078	-		MIT1002_03476	0.39	-1.0
3,885,080	+		MIT1002_03476	0.40	+0.9
3,885,080	+		MIT1002_03476	0.40	+1.6
3,885,140	+		MIT1002_03476	0.46	+0.3
3,885,149	-		MIT1002_03476	0.47	+0.6
3,885,149	-		MIT1002_03476	0.47	+0.3
3,885,266	-		MIT1002_03476	0.60	+0.5
3,885,346	+		MIT1002_03476	0.69	+0.1
3,885,354	-		MIT1002_03476	0.70	+0.9
3,885,354	-		MIT1002_03476	0.70	-0.2
3,885,363	-		MIT1002_03476	0.71	+0.7
3,885,367	+		MIT1002_03476	0.72	-0.1
3,885,408	+		MIT1002_03476	0.76	-0.3
3,885,458	+		MIT1002_03476	0.82	+0.3
3,885,465	+		MIT1002_03476	0.83	+0.7
3,885,470	+		MIT1002_03476	0.83	+1.4
3,885,521	+		MIT1002_03476	0.89	-0.3
3,885,654	+				-1.3
3,885,654	+				-0.1
3,885,654	+				-0.5
3,885,734	+		MIT1002_03477	0.21	+0.2
3,885,742	-		MIT1002_03477	0.24	+0.3
3,885,770	+		MIT1002_03477	0.36	+0.7
3,885,787	-		MIT1002_03477	0.43	+0.8
3,885,963	+				+0.5
3,885,971	-				+1.0
3,886,000	-				-0.3
3,886,031	-				+0.4
3,886,052	-				-0.3
3,886,066	+				+0.1
3,886,109	-				+0.1
3,886,208	-				+0.9
3,886,220	+				+0.7
3,886,220	+				+0.2
3,886,245	+				+1.6
3,886,245	+				+0.3
3,886,340	+		MIT1002_03478	0.18	+0.0
3,886,367	-		MIT1002_03478	0.21	+0.4
3,886,367	-		MIT1002_03478	0.21	+0.2
3,886,369	+		MIT1002_03478	0.21	+0.5
3,886,377	-		MIT1002_03478	0.22	-0.7
3,886,377	-		MIT1002_03478	0.22	-0.1
3,886,377	-		MIT1002_03478	0.22	-0.1
3,886,377	-		MIT1002_03478	0.22	-0.3
3,886,448	+		MIT1002_03478	0.28	+0.1
3,886,456	+		MIT1002_03478	0.29	+0.9
3,886,456	-		MIT1002_03478	0.29	+0.7
3,886,456	-		MIT1002_03478	0.29	-0.1
3,886,464	-		MIT1002_03478	0.30	-1.5
3,886,529	+		MIT1002_03478	0.36	-0.7
3,886,529	+		MIT1002_03478	0.36	-0.8
3,886,529	+		MIT1002_03478	0.36	-0.3
3,886,537	-		MIT1002_03478	0.36	+1.7
3,886,537	-		MIT1002_03478	0.36	+0.8
3,886,537	-		MIT1002_03478	0.36	+1.1
3,886,537	-		MIT1002_03478	0.36	+0.7
3,886,554	-		MIT1002_03478	0.38	+0.6