Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03402

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
3,805,094	+		MIT1002_03401	0.12	-1.7
3,805,122	-		MIT1002_03401	0.15	-0.1
3,805,122	-		MIT1002_03401	0.15	-0.6
3,805,122	-		MIT1002_03401	0.15	+0.6
3,805,136	-		MIT1002_03401	0.16	-1.6
3,805,238	-		MIT1002_03401	0.26	-1.1
3,805,248	-		MIT1002_03401	0.27	-1.5
3,805,248	-		MIT1002_03401	0.27	-1.3
3,805,274	-		MIT1002_03401	0.30	-0.2
3,805,410	+		MIT1002_03401	0.43	+0.9
3,805,445	-		MIT1002_03401	0.46	-0.1
3,805,460	+		MIT1002_03401	0.48	+1.6
3,805,463	+		MIT1002_03401	0.48	-0.7
3,805,468	-		MIT1002_03401	0.49	-0.1
3,805,519	+		MIT1002_03401	0.54	-0.2
3,805,527	+		MIT1002_03401	0.54	+3.0
3,805,527	+		MIT1002_03401	0.54	+1.4
3,805,527	+		MIT1002_03401	0.54	-0.2
3,805,527	+		MIT1002_03401	0.54	-1.1
3,805,556	+		MIT1002_03401	0.57	+0.9
3,805,614	-		MIT1002_03401	0.63	-0.1
3,805,621	+		MIT1002_03401	0.64	-0.4
3,805,643	+		MIT1002_03401	0.66	-0.3
3,805,646	+		MIT1002_03401	0.66	-0.4
3,805,703	+		MIT1002_03401	0.72	-0.1
3,805,878	+		MIT1002_03401	0.89	-0.5
3,805,886	-		MIT1002_03401	0.90	-0.6
3,805,947	+				-0.4
3,805,955	-				+1.4
3,805,955	-				-0.4
3,805,961	+				+0.5
3,805,962	+				-0.7
3,805,962	+				+0.7
3,805,962	+				+0.4
3,805,970	-				-0.3
3,805,970	-				-0.2
3,806,077	+				+0.3
3,806,085	-				+0.1
3,806,085	-				+0.6
3,806,136	+				+0.4
3,806,144	-				+0.2
3,806,145	-				+0.1
3,806,145	-				-0.2
3,806,147	+				-2.3
3,806,155	-				-0.9
3,806,155	-				-1.7
3,806,207	+		MIT1002_03402	0.12	-1.2
3,806,280	-		MIT1002_03402	0.16	-1.2
3,806,307	+		MIT1002_03402	0.18	-2.6
3,806,320	-		MIT1002_03402	0.18	+0.1
3,806,346	+		MIT1002_03402	0.20	-0.5
3,806,407	-		MIT1002_03402	0.24	+0.4
3,806,527	+		MIT1002_03402	0.30	-1.5
3,806,639	-		MIT1002_03402	0.37	-0.5
3,806,649	-		MIT1002_03402	0.37	-0.4
3,806,732	+		MIT1002_03402	0.42	+0.8
3,806,750	-		MIT1002_03402	0.43	+0.3
3,806,753	+		MIT1002_03402	0.44	-0.4
3,806,781	+		MIT1002_03402	0.45	+0.7
3,806,834	-		MIT1002_03402	0.48	+0.5
3,806,862	+		MIT1002_03402	0.50	-0.6
3,806,862	+		MIT1002_03402	0.50	-0.0
3,806,870	-		MIT1002_03402	0.50	+1.2
3,806,870	-		MIT1002_03402	0.50	-0.9
3,806,871	-		MIT1002_03402	0.50	+0.4
3,806,885	-		MIT1002_03402	0.51	-0.3
3,806,885	-		MIT1002_03402	0.51	-0.1
3,806,935	+		MIT1002_03402	0.54	-0.1
3,806,938	+		MIT1002_03402	0.54	+0.4
3,806,942	+		MIT1002_03402	0.54	-0.5
3,806,946	-		MIT1002_03402	0.55	-0.3
3,806,960	-		MIT1002_03402	0.55	+0.7
3,806,970	-		MIT1002_03402	0.56	-0.1
3,807,068	-		MIT1002_03402	0.62	-0.4
3,807,084	+		MIT1002_03402	0.63	-0.7
3,807,098	+		MIT1002_03402	0.63	-0.2
3,807,214	+		MIT1002_03402	0.70	+0.0
3,807,237	-		MIT1002_03402	0.71	+0.4
3,807,248	-		MIT1002_03402	0.72	+0.3
3,807,250	+		MIT1002_03402	0.72	+0.9
3,807,274	-		MIT1002_03402	0.74	+1.7
3,807,275	+		MIT1002_03402	0.74	+1.9
3,807,374	-		MIT1002_03402	0.79	-0.8
3,807,418	+		MIT1002_03402	0.82	+0.3
3,807,423	+		MIT1002_03402	0.82	-2.4
3,807,431	-		MIT1002_03402	0.83	-0.5
3,807,432	-		MIT1002_03402	0.83	-0.7
3,807,436	+		MIT1002_03402	0.83	+0.3
3,807,540	-		MIT1002_03402	0.89	+0.3
3,807,542	+		MIT1002_03402	0.89	+0.3
3,807,589	+				+2.1
3,807,602	-				-0.9
3,807,695	+				-0.0
3,807,721	-				+1.7
3,807,759	-				-0.2