Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03148

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
3,508,070	-				+0.5
3,508,090	-				+0.6
3,508,156	+				+1.1
3,508,156	+				+2.2
3,508,164	-		MIT1002_03146	0.11	+0.8
3,508,164	-		MIT1002_03146	0.11	-1.8
3,508,164	-		MIT1002_03146	0.11	-0.1
3,508,188	+		MIT1002_03146	0.17	-0.9
3,508,196	-		MIT1002_03146	0.19	-1.4
3,508,222	+		MIT1002_03146	0.25	-0.1
3,508,232	-		MIT1002_03146	0.28	+0.1
3,508,479	+		MIT1002_03146	0.89	+0.4
3,508,543	+				-1.5
3,508,548	+				+0.8
3,508,548	+				-0.5
3,508,549	+				-0.9
3,508,556	-				-0.4
3,508,585	+				+1.0
3,508,602	+				-0.1
3,508,602	+				+0.3
3,508,612	-				+0.7
3,508,620	+				-1.0
3,508,719	+		MIT1002_03147	0.15	-0.9
3,508,863	-		MIT1002_03147	0.50	+0.1
3,508,903	-		MIT1002_03147	0.60	-1.3
3,509,019	-		MIT1002_03147	0.89	-0.0
3,509,204	-		MIT1002_03148	0.24	-0.3
3,509,228	+		MIT1002_03148	0.28	-0.6
3,509,228	+		MIT1002_03148	0.28	+0.1
3,509,250	-		MIT1002_03148	0.32	+0.5
3,509,271	+		MIT1002_03148	0.35	-1.0
3,509,391	+		MIT1002_03148	0.55	+0.2
3,509,409	-		MIT1002_03148	0.58	+1.3
3,509,455	+		MIT1002_03148	0.66	+1.4
3,509,467	+		MIT1002_03148	0.67	-0.8
3,509,491	+		MIT1002_03148	0.71	+0.2
3,509,586	+		MIT1002_03148	0.87	+1.0
3,509,621	+				+0.4
3,509,629	-				-0.5
3,509,656	+				-1.6
3,509,712	+				+1.2
3,509,733	+				-0.2
3,509,812	-				+1.4
3,509,812	-				-1.2
3,509,921	-		MIT1002_03149	0.17	+0.3
3,509,940	+		MIT1002_03149	0.18	-0.5
3,509,949	-		MIT1002_03149	0.19	+0.4
3,509,987	+		MIT1002_03149	0.22	-0.7
3,509,995	-		MIT1002_03149	0.22	+0.9
3,510,008	+		MIT1002_03149	0.23	-0.5
3,510,013	+		MIT1002_03149	0.23	-0.5
3,510,023	-		MIT1002_03149	0.24	+1.1
3,510,124	+		MIT1002_03149	0.32	+0.5
3,510,138	+		MIT1002_03149	0.33	-1.3
3,510,162	-		MIT1002_03149	0.34	-0.5
3,510,198	-		MIT1002_03149	0.37	-0.8
3,510,198	-		MIT1002_03149	0.37	+0.1
3,510,240	+		MIT1002_03149	0.40	-1.0
3,510,265	+		MIT1002_03149	0.42	+0.5
3,510,265	-		MIT1002_03149	0.42	-0.6
3,510,272	+		MIT1002_03149	0.43	-0.3
3,510,358	+		MIT1002_03149	0.49	+0.7
3,510,477	-		MIT1002_03149	0.58	-1.7
3,510,534	-		MIT1002_03149	0.62	-0.4
3,510,534	-		MIT1002_03149	0.62	-0.2
3,510,568	+		MIT1002_03149	0.64	-0.5
3,510,600	-		MIT1002_03149	0.67	-0.1
3,510,604	-		MIT1002_03149	0.67	+0.8
3,510,661	-		MIT1002_03149	0.71	-0.1