Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03025

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03024 and MIT1002_03025 overlap by 1 nucleotidesMIT1002_03025 and MIT1002_03026 overlap by 8 nucleotides MIT1002_03024: MIT1002_03024 - UDP-N-acetylmuramate--L-alanine ligase, at 3,369,022 to 3,370,467 _03024 MIT1002_03025: MIT1002_03025 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 3,370,467 to 3,371,585 _03025 MIT1002_03026: MIT1002_03026 - Cell division protein FtsW, at 3,371,578 to 3,373,002 _03026 Position (kb) 3370 3371 3372Strain fitness (log2 ratio) -1 0 1at 3370.480 kb on - strandat 3371.621 kb on - strandat 3371.803 kb on - strand, within MIT1002_03026at 3371.803 kb on - strand, within MIT1002_03026

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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3,370,480 - +1.1
3,371,621 - +1.4
3,371,803 - MIT1002_03026 0.16 +1.3
3,371,803 - MIT1002_03026 0.16 -1.2

Or see this region's nucleotide sequence