Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03023

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03021 and MIT1002_03022 are separated by 7 nucleotidesMIT1002_03022 and MIT1002_03023 are separated by 2 nucleotidesMIT1002_03023 and MIT1002_03024 are separated by 1 nucleotides MIT1002_03021: MIT1002_03021 - Cell division protein FtsA, at 3,366,027 to 3,367,256 _03021 MIT1002_03022: MIT1002_03022 - Cell division protein FtsQ, at 3,367,264 to 3,368,034 _03022 MIT1002_03023: MIT1002_03023 - D-alanine--D-alanine ligase, at 3,368,037 to 3,369,020 _03023 MIT1002_03024: MIT1002_03024 - UDP-N-acetylmuramate--L-alanine ligase, at 3,369,022 to 3,370,467 _03024 Position (kb) 3368 3369 3370Strain fitness (log2 ratio) -1 0 1at 3367.278 kb on - strandat 3367.278 kb on - strandat 3368.065 kb on - strandat 3369.076 kb on - strandat 3369.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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3,367,278 - -1.7
3,367,278 - -1.2
3,368,065 - +0.2
3,369,076 - -0.9
3,369,076 - -0.8

Or see this region's nucleotide sequence