Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03018

Experiment: monoculture; Experiment A, time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_03017 and MIT1002_03018 are separated by 181 nucleotidesMIT1002_03018 and MIT1002_03019 are separated by 207 nucleotides MIT1002_03017: MIT1002_03017 - preprotein translocase subunit SecA, at 3,359,649 to 3,362,357 _03017 MIT1002_03018: MIT1002_03018 - Murein hydrolase activator NlpD precursor, at 3,362,539 to 3,363,417 _03018 MIT1002_03019: MIT1002_03019 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 3,363,625 to 3,364,536 _03019 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -1 0 1at 3363.302 kb on - strand, within MIT1002_03018at 3363.360 kb on + strandat 3363.360 kb on + strandat 3363.360 kb on + strandat 3363.360 kb on + strandat 3363.368 kb on - strandat 3363.368 kb on - strandat 3363.368 kb on - strandat 3363.368 kb on - strandat 3363.368 kb on - strandat 3363.368 kb on - strandat 3363.368 kb on - strandat 3363.501 kb on + strandat 3363.509 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
remove
3,363,302 - MIT1002_03018 0.87 -0.2
3,363,360 + -1.3
3,363,360 + +0.9
3,363,360 + +0.0
3,363,360 + -0.7
3,363,368 - +0.1
3,363,368 - -0.7
3,363,368 - +0.7
3,363,368 - -1.2
3,363,368 - -0.7
3,363,368 - -0.7
3,363,368 - +0.5
3,363,501 + -0.7
3,363,509 - -0.7

Or see this region's nucleotide sequence