Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02693

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02691 and MIT1002_02692 are separated by 29 nucleotidesMIT1002_02692 and MIT1002_02693 are separated by 32 nucleotidesMIT1002_02693 and MIT1002_02694 are separated by 135 nucleotidesMIT1002_02694 and MIT1002_02695 are separated by 41 nucleotides MIT1002_02691: MIT1002_02691 - Exodeoxyribonuclease 7 small subunit, at 2,992,420 to 2,992,731 _02691 MIT1002_02692: MIT1002_02692 - Farnesyl diphosphate synthase, at 2,992,761 to 2,993,651 _02692 MIT1002_02693: MIT1002_02693 - 1-deoxy-D-xylulose-5-phosphate synthase, at 2,993,684 to 2,995,564 _02693 MIT1002_02694: MIT1002_02694 - Phosphatidylglycerophosphatase A, at 2,995,700 to 2,996,200 _02694 MIT1002_02695: MIT1002_02695 - Thiamine-monophosphate kinase, at 2,996,242 to 2,997,207 _02695 Position (kb) 2993 2994 2995 2996Strain fitness (log2 ratio) -2 -1 0 1at 2992.725 kb on + strandat 2992.725 kb on + strandat 2995.882 kb on - strand, within MIT1002_02694at 2996.086 kb on - strand, within MIT1002_02694at 2996.184 kb on - strandat 2996.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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2,992,725 + -0.4
2,992,725 + +0.4
2,995,882 - MIT1002_02694 0.36 -0.7
2,996,086 - MIT1002_02694 0.77 -0.8
2,996,184 - -1.9
2,996,248 - +0.7

Or see this region's nucleotide sequence