Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02691 and MIT1002_02692 are separated by 29 nucleotides MIT1002_02692 and MIT1002_02693 are separated by 32 nucleotides MIT1002_02693 and MIT1002_02694 are separated by 135 nucleotides MIT1002_02694 and MIT1002_02695 are separated by 41 nucleotides
MIT1002_02691: MIT1002_02691 - Exodeoxyribonuclease 7 small subunit, at 2,992,420 to 2,992,731
_02691
MIT1002_02692: MIT1002_02692 - Farnesyl diphosphate synthase, at 2,992,761 to 2,993,651
_02692
MIT1002_02693: MIT1002_02693 - 1-deoxy-D-xylulose-5-phosphate synthase, at 2,993,684 to 2,995,564
_02693
MIT1002_02694: MIT1002_02694 - Phosphatidylglycerophosphatase A, at 2,995,700 to 2,996,200
_02694
MIT1002_02695: MIT1002_02695 - Thiamine-monophosphate kinase, at 2,996,242 to 2,997,207
_02695
Position (kb)
2993
2994
2995
2996 Strain fitness (log2 ratio)
-2
-1
0
1 at 2992.725 kb on + strand at 2992.725 kb on + strand at 2995.882 kb on - strand, within MIT1002_02694 at 2996.086 kb on - strand, within MIT1002_02694 at 2996.184 kb on - strand at 2996.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 2,992,725 + -0.4 2,992,725 + +0.4 2,995,882 - MIT1002_02694 0.36 -0.7 2,996,086 - MIT1002_02694 0.77 -0.8 2,996,184 - -1.9 2,996,248 - +0.7
Or see this region's nucleotide sequence