Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02689

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,989,414	+		MIT1002_02688	0.29	-0.9
2,989,422	-		MIT1002_02688	0.30	-0.2
2,989,500	-		MIT1002_02688	0.36	+0.9
2,989,500	-		MIT1002_02688	0.36	+0.9
2,989,535	+		MIT1002_02688	0.39	-0.3
2,989,544	-		MIT1002_02688	0.40	+0.0
2,989,604	+		MIT1002_02688	0.44	-0.8
2,989,604	+		MIT1002_02688	0.44	+0.3
2,989,604	+		MIT1002_02688	0.44	+0.3
2,989,612	-		MIT1002_02688	0.45	+0.5
2,989,612	-		MIT1002_02688	0.45	-0.6
2,989,612	-		MIT1002_02688	0.45	-0.5
2,989,612	-		MIT1002_02688	0.45	+0.7
2,989,619	+		MIT1002_02688	0.46	-1.8
2,989,665	+		MIT1002_02688	0.49	+0.1
2,989,666	-		MIT1002_02688	0.49	-0.2
2,989,688	-		MIT1002_02688	0.51	-1.0
2,989,733	-		MIT1002_02688	0.55	-0.8
2,989,913	+		MIT1002_02688	0.69	-0.2
2,989,913	+		MIT1002_02688	0.69	-0.6
2,989,913	+		MIT1002_02688	0.69	-0.5
2,989,921	-		MIT1002_02688	0.70	+0.5
2,989,951	+		MIT1002_02688	0.72	+1.2
2,989,959	-		MIT1002_02688	0.73	-1.4
2,989,981	-		MIT1002_02688	0.74	+0.9
2,990,031	+		MIT1002_02688	0.78	-0.0
2,990,031	+		MIT1002_02688	0.78	-1.4
2,990,039	-		MIT1002_02688	0.79	+0.1
2,990,039	-		MIT1002_02688	0.79	-0.5
2,990,039	-		MIT1002_02688	0.79	+0.0
2,990,039	-		MIT1002_02688	0.79	-2.2
2,990,039	-		MIT1002_02688	0.79	-1.4
2,990,165	+		MIT1002_02688	0.89	-0.1
2,990,173	-		MIT1002_02688	0.90	+0.1
2,990,294	+				+0.1
2,990,294	+				-0.5
2,990,353	+				-0.2
2,990,404	+				+0.5
2,990,410	+				+0.3
2,990,410	+				-0.1
2,990,410	+				-0.1
2,990,412	-				+1.4
2,990,418	-				+0.1
2,990,418	-				+0.8
2,990,418	-				-0.2
2,990,418	-				-0.3
2,990,418	-				+0.9
2,990,418	-				+0.3
2,990,418	-				+0.8
2,990,420	+				+0.1
2,990,420	+				-0.7
2,990,425	+				+0.2
2,990,425	+				-0.1
2,990,428	-				-0.5
2,990,430	+				-0.1
2,990,433	-				-0.5
2,990,433	-				+0.0
2,990,433	-				+1.0
2,990,433	-				+0.7
2,990,472	+				-1.4
2,990,515	+		MIT1002_02689	0.14	+2.6
2,990,569	+		MIT1002_02689	0.19	-0.3
2,990,590	-		MIT1002_02689	0.22	+0.1
2,990,645	-		MIT1002_02689	0.28	+0.1
2,990,652	-		MIT1002_02689	0.28	+0.0
2,990,766	-		MIT1002_02689	0.41	+1.0
2,990,782	+		MIT1002_02689	0.42	+0.5
2,990,889	+		MIT1002_02689	0.54	-0.2
2,990,968	-		MIT1002_02689	0.62	+2.2
2,991,049	-		MIT1002_02689	0.71	+2.1
2,991,069	-		MIT1002_02689	0.73	+1.1
2,991,069	-		MIT1002_02689	0.73	+0.6
2,991,076	+		MIT1002_02689	0.74	-1.6
2,991,100	+		MIT1002_02689	0.77	-0.1
2,991,106	-		MIT1002_02689	0.77	-0.3
2,991,108	-		MIT1002_02689	0.77	+0.5
2,991,163	-		MIT1002_02689	0.83	+0.5
2,991,251	-				+0.4
2,991,251	-				-0.8
2,991,349	+				+1.0
2,991,354	+				+0.5
2,991,357	-				+1.1
2,991,409	+		MIT1002_02690	0.12	+0.4
2,991,469	+		MIT1002_02690	0.20	-0.3
2,991,469	+		MIT1002_02690	0.20	+0.7
2,991,558	+		MIT1002_02690	0.32	+0.2
2,991,564	+		MIT1002_02690	0.32	-0.1
2,991,566	-		MIT1002_02690	0.33	-0.2
2,991,566	-		MIT1002_02690	0.33	-0.5
2,991,675	-		MIT1002_02690	0.47	+0.2
2,991,703	-		MIT1002_02690	0.51	+0.5
2,991,719	-		MIT1002_02690	0.53	-1.0
2,991,729	-		MIT1002_02690	0.54	+0.8
2,991,747	-		MIT1002_02690	0.56	-0.0
2,991,749	+		MIT1002_02690	0.57	+0.6
2,991,757	-		MIT1002_02690	0.58	-1.9
2,991,757	-		MIT1002_02690	0.58	+0.7
2,991,757	-		MIT1002_02690	0.58	-0.8
2,991,757	-		MIT1002_02690	0.58	-0.5
2,991,761	-		MIT1002_02690	0.58	-0.2
2,991,854	+		MIT1002_02690	0.70	+1.8
2,991,862	-		MIT1002_02690	0.72	-0.9
2,991,917	-		MIT1002_02690	0.79	+0.3
2,992,049	+				-0.5
2,992,055	+				-1.7
2,992,084	-				+0.5
2,992,210	-				-0.8