Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02688

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,988,073	-		MIT1002_02686	0.82	+0.2
2,988,124	+		MIT1002_02686	0.86	-0.5
2,988,138	+		MIT1002_02686	0.87	-1.7
2,988,141	+		MIT1002_02686	0.87	+0.8
2,988,141	+		MIT1002_02686	0.87	+1.2
2,988,195	+				+0.0
2,988,316	+				-1.5
2,988,322	+				-0.4
2,988,324	-				+1.3
2,988,330	-				-1.2
2,988,342	+				+0.8
2,988,343	+				-1.3
2,988,348	+				-0.2
2,988,351	-				-0.9
2,988,351	-				-0.9
2,988,351	-				+0.4
2,988,356	-				+0.1
2,988,358	+				+0.4
2,988,376	+		MIT1002_02687	0.10	-3.2
2,988,390	+		MIT1002_02687	0.12	+0.9
2,988,444	+		MIT1002_02687	0.19	-0.5
2,988,449	+		MIT1002_02687	0.20	+1.0
2,988,460	+		MIT1002_02687	0.22	-0.9
2,988,478	-		MIT1002_02687	0.24	+0.8
2,988,484	+		MIT1002_02687	0.25	-0.4
2,988,487	+		MIT1002_02687	0.25	+0.3
2,988,495	-		MIT1002_02687	0.26	-0.7
2,988,497	-		MIT1002_02687	0.27	+0.8
2,988,524	+		MIT1002_02687	0.30	-0.3
2,988,532	-		MIT1002_02687	0.31	-0.2
2,988,542	-		MIT1002_02687	0.33	-0.3
2,988,542	-		MIT1002_02687	0.33	-0.5
2,988,542	-		MIT1002_02687	0.33	-0.6
2,988,544	+		MIT1002_02687	0.33	-0.0
2,988,563	+		MIT1002_02687	0.35	-1.6
2,988,605	-		MIT1002_02687	0.41	+0.2
2,988,684	+		MIT1002_02687	0.52	+1.3
2,988,684	+		MIT1002_02687	0.52	-0.0
2,988,692	-		MIT1002_02687	0.53	-0.7
2,988,692	-		MIT1002_02687	0.53	-0.1
2,988,745	+		MIT1002_02687	0.60	+1.0
2,988,753	-		MIT1002_02687	0.61	-0.5
2,988,776	+		MIT1002_02687	0.64	-0.3
2,988,929	+		MIT1002_02687	0.85	-0.0
2,988,978	+				-0.1
2,988,986	-				+0.7
2,988,999	-				+0.1
2,989,014	-				+1.2
2,989,014	-				-0.3
2,989,076	+				-0.4
2,989,076	+				-1.0
2,989,076	+				-1.9
2,989,076	+				-1.0
2,989,084	-				+1.7
2,989,084	-				+0.0
2,989,091	-				-0.5
2,989,106	+				+2.0
2,989,135	-				-0.6
2,989,196	-		MIT1002_02688	0.12	-0.6
2,989,196	-		MIT1002_02688	0.12	+0.0
2,989,206	-		MIT1002_02688	0.13	+0.3
2,989,237	+		MIT1002_02688	0.15	+0.5
2,989,237	+		MIT1002_02688	0.15	-0.8
2,989,296	-		MIT1002_02688	0.20	+0.8
2,989,301	+		MIT1002_02688	0.20	+1.1
2,989,363	-		MIT1002_02688	0.25	-0.4
2,989,414	+		MIT1002_02688	0.29	-0.9
2,989,422	-		MIT1002_02688	0.30	-0.2
2,989,500	-		MIT1002_02688	0.36	+0.9
2,989,500	-		MIT1002_02688	0.36	+0.9
2,989,535	+		MIT1002_02688	0.39	-0.3
2,989,544	-		MIT1002_02688	0.40	+0.0
2,989,604	+		MIT1002_02688	0.44	-0.8
2,989,604	+		MIT1002_02688	0.44	+0.3
2,989,604	+		MIT1002_02688	0.44	+0.3
2,989,612	-		MIT1002_02688	0.45	+0.5
2,989,612	-		MIT1002_02688	0.45	-0.6
2,989,612	-		MIT1002_02688	0.45	-0.5
2,989,612	-		MIT1002_02688	0.45	+0.7
2,989,619	+		MIT1002_02688	0.46	-1.8
2,989,665	+		MIT1002_02688	0.49	+0.1
2,989,666	-		MIT1002_02688	0.49	-0.2
2,989,688	-		MIT1002_02688	0.51	-1.0
2,989,733	-		MIT1002_02688	0.55	-0.8
2,989,913	+		MIT1002_02688	0.69	-0.2
2,989,913	+		MIT1002_02688	0.69	-0.6
2,989,913	+		MIT1002_02688	0.69	-0.5
2,989,921	-		MIT1002_02688	0.70	+0.5
2,989,951	+		MIT1002_02688	0.72	+1.2
2,989,959	-		MIT1002_02688	0.73	-1.4
2,989,981	-		MIT1002_02688	0.74	+0.9
2,990,031	+		MIT1002_02688	0.78	-0.0
2,990,031	+		MIT1002_02688	0.78	-1.4
2,990,039	-		MIT1002_02688	0.79	+0.1
2,990,039	-		MIT1002_02688	0.79	-0.5
2,990,039	-		MIT1002_02688	0.79	+0.0
2,990,039	-		MIT1002_02688	0.79	-2.2
2,990,039	-		MIT1002_02688	0.79	-1.4
2,990,165	+		MIT1002_02688	0.89	-0.1
2,990,173	-		MIT1002_02688	0.90	+0.1
2,990,294	+				+0.1
2,990,294	+				-0.5
2,990,353	+				-0.2
2,990,404	+				+0.5
2,990,410	+				+0.3
2,990,410	+				-0.1
2,990,410	+				-0.1
2,990,412	-				+1.4
2,990,418	-				+0.1
2,990,418	-				+0.8
2,990,418	-				-0.2
2,990,418	-				-0.3
2,990,418	-				+0.9
2,990,418	-				+0.3
2,990,418	-				+0.8
2,990,420	+				+0.1
2,990,420	+				-0.7
2,990,425	+				+0.2
2,990,425	+				-0.1
2,990,428	-				-0.5
2,990,430	+				-0.1
2,990,433	-				-0.5
2,990,433	-				+0.0
2,990,433	-				+1.0
2,990,433	-				+0.7
2,990,472	+				-1.4
2,990,515	+		MIT1002_02689	0.14	+2.6
2,990,569	+		MIT1002_02689	0.19	-0.3
2,990,590	-		MIT1002_02689	0.22	+0.1
2,990,645	-		MIT1002_02689	0.28	+0.1
2,990,652	-		MIT1002_02689	0.28	+0.0
2,990,766	-		MIT1002_02689	0.41	+1.0
2,990,782	+		MIT1002_02689	0.42	+0.5
2,990,889	+		MIT1002_02689	0.54	-0.2
2,990,968	-		MIT1002_02689	0.62	+2.2
2,991,049	-		MIT1002_02689	0.71	+2.1
2,991,069	-		MIT1002_02689	0.73	+1.1
2,991,069	-		MIT1002_02689	0.73	+0.6
2,991,076	+		MIT1002_02689	0.74	-1.6
2,991,100	+		MIT1002_02689	0.77	-0.1
2,991,106	-		MIT1002_02689	0.77	-0.3
2,991,108	-		MIT1002_02689	0.77	+0.5
2,991,163	-		MIT1002_02689	0.83	+0.5
2,991,251	-				+0.4
2,991,251	-				-0.8