Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02610

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,908,192	+		MIT1002_02609	0.27	-1.3
2,908,216	+		MIT1002_02609	0.30	+0.2
2,908,229	+		MIT1002_02609	0.31	-0.0
2,908,249	-		MIT1002_02609	0.33	-0.3
2,908,257	+		MIT1002_02609	0.34	-1.2
2,908,263	+		MIT1002_02609	0.35	-0.9
2,908,263	+		MIT1002_02609	0.35	+1.6
2,908,263	+		MIT1002_02609	0.35	+1.4
2,908,265	-		MIT1002_02609	0.35	-0.3
2,908,270	-		MIT1002_02609	0.36	+0.6
2,908,271	-		MIT1002_02609	0.36	-0.2
2,908,271	-		MIT1002_02609	0.36	+0.4
2,908,271	-		MIT1002_02609	0.36	-2.1
2,908,271	-		MIT1002_02609	0.36	+0.3
2,908,271	-		MIT1002_02609	0.36	-0.1
2,908,286	+		MIT1002_02609	0.38	-1.1
2,908,311	-		MIT1002_02609	0.40	+0.2
2,908,317	+		MIT1002_02609	0.41	-0.8
2,908,347	+		MIT1002_02609	0.44	-0.7
2,908,347	+		MIT1002_02609	0.44	-1.4
2,908,347	+		MIT1002_02609	0.44	-1.7
2,908,355	-		MIT1002_02609	0.45	-2.1
2,908,376	+		MIT1002_02609	0.48	+0.1
2,908,376	+		MIT1002_02609	0.48	-0.9
2,908,376	+		MIT1002_02609	0.48	+0.1
2,908,377	-		MIT1002_02609	0.48	+0.4
2,908,384	-		MIT1002_02609	0.49	-1.2
2,908,384	-		MIT1002_02609	0.49	-0.1
2,908,386	+		MIT1002_02609	0.49	+0.7
2,908,389	+		MIT1002_02609	0.49	-0.2
2,908,394	-		MIT1002_02609	0.50	-0.8
2,908,394	-		MIT1002_02609	0.50	-1.1
2,908,402	-		MIT1002_02609	0.51	+0.1
2,908,423	+		MIT1002_02609	0.53	+0.1
2,908,439	-		MIT1002_02609	0.55	-0.6
2,908,442	-		MIT1002_02609	0.55	+0.3
2,908,442	-		MIT1002_02609	0.55	-0.8
2,908,442	-		MIT1002_02609	0.55	+0.3
2,908,444	+		MIT1002_02609	0.55	-0.2
2,908,444	+		MIT1002_02609	0.55	+0.9
2,908,444	+		MIT1002_02609	0.55	-0.2
2,908,444	+		MIT1002_02609	0.55	+0.2
2,908,452	-		MIT1002_02609	0.56	-0.1
2,908,452	-		MIT1002_02609	0.56	-0.0
2,908,452	-		MIT1002_02609	0.56	+0.9
2,908,452	-		MIT1002_02609	0.56	+0.8
2,908,456	+		MIT1002_02609	0.57	+0.7
2,908,461	+		MIT1002_02609	0.57	-0.3
2,908,461	+		MIT1002_02609	0.57	-2.4
2,908,464	-		MIT1002_02609	0.57	+0.1
2,908,464	-		MIT1002_02609	0.57	-0.4
2,908,489	+		MIT1002_02609	0.60	-1.4
2,908,494	+		MIT1002_02609	0.61	-0.6
2,908,497	-		MIT1002_02609	0.61	+0.8
2,908,497	-		MIT1002_02609	0.61	-0.8
2,908,518	+		MIT1002_02609	0.64	-1.2
2,908,602	-		MIT1002_02609	0.73	+0.4
2,908,644	-		MIT1002_02609	0.78	-0.0
2,908,683	+		MIT1002_02609	0.82	-0.5
2,908,706	+		MIT1002_02609	0.85	-0.2
2,908,714	+		MIT1002_02609	0.85	-1.0
2,908,729	+		MIT1002_02609	0.87	+1.2
2,908,796	-				-0.8
2,908,800	+				-0.4
2,908,808	-				-0.3
2,908,835	-				-0.5
2,908,847	-				+0.0
2,908,874	+				+0.0
2,908,875	+				-2.7
2,908,882	-				-1.0
2,908,883	-				+0.5
2,908,884	+				+0.3
2,908,910	+				-1.2
2,908,994	+				+1.1
2,909,002	+				+0.1
2,909,071	-				+0.4
2,909,141	-				-0.4
2,909,166	-				-0.3
2,909,222	+				+1.9
2,909,280	+		MIT1002_02610	0.18	+0.1
2,909,293	+		MIT1002_02610	0.20	+0.6
2,909,293	+		MIT1002_02610	0.20	-0.1
2,909,301	-		MIT1002_02610	0.21	+1.2
2,909,301	-		MIT1002_02610	0.21	+0.0
2,909,301	-		MIT1002_02610	0.21	+0.8
2,909,301	-		MIT1002_02610	0.21	-1.1
2,909,303	+		MIT1002_02610	0.21	-0.5
2,909,303	+		MIT1002_02610	0.21	+0.5
2,909,303	+		MIT1002_02610	0.21	+0.1
2,909,303	+		MIT1002_02610	0.21	-0.1
2,909,303	+		MIT1002_02610	0.21	+0.6
2,909,303	+		MIT1002_02610	0.21	-0.4
2,909,343	-		MIT1002_02610	0.28	+0.8
2,909,343	-		MIT1002_02610	0.28	-1.9
2,909,541	-		MIT1002_02610	0.60	-0.3
2,909,541	-		MIT1002_02610	0.60	+0.1
2,909,541	-		MIT1002_02610	0.60	+0.2
2,909,541	-		MIT1002_02610	0.60	-0.6
2,909,598	-		MIT1002_02610	0.70	+0.9
2,909,598	-		MIT1002_02610	0.70	-1.3
2,909,600	+		MIT1002_02610	0.70	+0.7
2,909,608	-		MIT1002_02610	0.71	+1.9
2,909,612	+		MIT1002_02610	0.72	+0.4
2,909,612	+		MIT1002_02610	0.72	-0.1
2,909,612	+		MIT1002_02610	0.72	-0.2
2,909,643	-		MIT1002_02610	0.77	+1.4
2,909,806	+				-0.9
2,909,868	+				-0.9
2,909,896	+				+0.1
2,909,904	-				-0.2
2,910,086	-				-0.2
2,910,107	-				+1.6
2,910,107	-				-0.1
2,910,216	-		MIT1002_02611	0.17	-1.1
2,910,233	+		MIT1002_02611	0.19	-1.0
2,910,238	+		MIT1002_02611	0.19	-0.8
2,910,238	+		MIT1002_02611	0.19	-2.1
2,910,246	-		MIT1002_02611	0.20	+0.2
2,910,246	-		MIT1002_02611	0.20	-0.4
2,910,249	+		MIT1002_02611	0.21	+0.1
2,910,332	+		MIT1002_02611	0.29	+0.2
2,910,340	-		MIT1002_02611	0.30	+0.8
2,910,391	+		MIT1002_02611	0.35	-0.7
2,910,404	+		MIT1002_02611	0.37	+0.9
2,910,407	-		MIT1002_02611	0.37	-2.4
2,910,436	+		MIT1002_02611	0.40	-1.9
2,910,494	+		MIT1002_02611	0.46	+0.0
2,910,502	-		MIT1002_02611	0.47	-0.5
2,910,511	+		MIT1002_02611	0.48	-0.1
2,910,517	-		MIT1002_02611	0.48	+1.0
2,910,580	+		MIT1002_02611	0.55	-0.0
2,910,598	+		MIT1002_02611	0.56	-0.7
2,910,733	+		MIT1002_02611	0.70	-0.0
2,910,741	-		MIT1002_02611	0.71	+0.1