Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02522

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,811,545	+		MIT1002_02520	0.83	+0.7
2,811,545	+		MIT1002_02520	0.83	+0.7
2,811,545	+		MIT1002_02520	0.83	-2.9
2,811,545	+		MIT1002_02520	0.83	-0.7
2,811,545	+		MIT1002_02520	0.83	-0.1
2,811,545	+		MIT1002_02520	0.83	-3.1
2,811,553	-		MIT1002_02520	0.84	-0.2
2,811,553	-		MIT1002_02520	0.84	-0.7
2,811,595	+		MIT1002_02520	0.90	-0.5
2,811,600	+				-1.2
2,811,684	-				+2.6
2,811,781	-				-0.2
2,811,782	+				-1.1
2,811,800	-				+0.5
2,811,809	+				-1.1
2,811,821	+				-1.1
2,812,162	+		MIT1002_02521	0.45	-1.3
2,812,199	+		MIT1002_02521	0.51	+0.3
2,812,199	+		MIT1002_02521	0.51	+0.2
2,812,207	-		MIT1002_02521	0.53	+0.6
2,812,207	-		MIT1002_02521	0.53	-0.1
2,812,211	+		MIT1002_02521	0.53	-0.4
2,812,233	-		MIT1002_02521	0.57	-1.8
2,812,240	-		MIT1002_02521	0.58	+0.3
2,812,240	-		MIT1002_02521	0.58	+0.8
2,812,240	-		MIT1002_02521	0.58	+2.6
2,812,278	+		MIT1002_02521	0.64	+0.3
2,812,278	+		MIT1002_02521	0.64	-0.1
2,812,318	-		MIT1002_02521	0.71	-0.2
2,812,337	+		MIT1002_02521	0.74	+0.2
2,812,343	-		MIT1002_02521	0.75	+0.4
2,812,345	-		MIT1002_02521	0.76	-0.4
2,812,345	-		MIT1002_02521	0.76	+0.9
2,812,394	+		MIT1002_02521	0.84	+1.4
2,813,780	+				-0.8
2,813,862	+				+0.2
2,813,896	+				-2.7
2,813,896	+				-0.3
2,813,904	-				-2.2
2,813,919	-				-0.4
2,813,981	-				-0.5
2,814,005	-				-4.7
2,814,140	+		MIT1002_02524	0.18	-1.7
2,814,263	+		MIT1002_02524	0.26	-1.2
2,814,274	+		MIT1002_02524	0.27	-4.2
2,814,274	+		MIT1002_02524	0.27	-7.7
2,814,274	+		MIT1002_02524	0.27	-2.1
2,814,274	+		MIT1002_02524	0.27	-4.4
2,814,282	-		MIT1002_02524	0.27	-3.5
2,814,297	-		MIT1002_02524	0.28	-1.9
2,814,307	+		MIT1002_02524	0.29	-4.4
2,814,307	+		MIT1002_02524	0.29	-3.5