Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02505

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,793,916	+		MIT1002_02504	0.55	+0.4
2,793,986	+		MIT1002_02504	0.59	-0.3
2,793,986	+		MIT1002_02504	0.59	+0.9
2,793,986	+		MIT1002_02504	0.59	-0.5
2,793,994	-		MIT1002_02504	0.60	+0.0
2,794,040	-		MIT1002_02504	0.62	+0.7
2,794,040	-		MIT1002_02504	0.62	+2.6
2,794,161	+		MIT1002_02504	0.69	+1.0
2,794,161	+		MIT1002_02504	0.69	-1.3
2,794,201	-		MIT1002_02504	0.71	+1.0
2,794,201	-		MIT1002_02504	0.71	+0.9
2,794,220	+		MIT1002_02504	0.72	-0.5
2,794,226	+		MIT1002_02504	0.73	-1.3
2,794,244	-		MIT1002_02504	0.74	-0.8
2,794,340	+		MIT1002_02504	0.79	+0.7
2,794,398	-		MIT1002_02504	0.82	+1.1
2,794,443	+		MIT1002_02504	0.85	+0.9
2,794,505	+		MIT1002_02504	0.88	+2.2
2,794,513	-		MIT1002_02504	0.89	+1.6
2,794,534	+				-0.4
2,794,534	+				-1.8
2,794,542	-				-0.8
2,794,542	-				+1.2
2,794,553	+				-0.0
2,794,607	-				+0.1
2,794,622	+				-1.3
2,794,624	-				+0.5
2,794,624	-				+1.5
2,794,630	-				+0.1
2,794,645	-				-0.4
2,794,702	-				-1.0
2,794,759	-				+0.8
2,794,862	+				-0.2
2,794,907	+				+0.2
2,794,962	+		MIT1002_02505	0.30	+0.1
2,794,982	-		MIT1002_02505	0.38	+1.0
2,794,982	-		MIT1002_02505	0.38	-1.4
2,794,983	+		MIT1002_02505	0.38	-1.2
2,795,007	+		MIT1002_02505	0.47	-0.2
2,795,015	-		MIT1002_02505	0.50	+2.8
2,795,025	+		MIT1002_02505	0.54	+0.2
2,795,025	+		MIT1002_02505	0.54	+0.2
2,795,033	-		MIT1002_02505	0.57	+1.4
2,795,076	+		MIT1002_02505	0.74	+0.8
2,795,130	+				-0.4
2,795,166	+				-1.2
2,795,223	-				+0.7
2,795,243	+				-1.4
2,795,251	-				+0.2
2,795,271	-				+0.4
2,795,271	-				+0.5
2,795,271	-				+0.1
2,795,298	-				+0.8
2,795,305	-				-0.3
2,795,352	+				+0.3
2,795,432	+		MIT1002_02506	0.32	+0.4
2,795,440	-		MIT1002_02506	0.36	+0.2
2,795,786	-				-0.2
2,796,032	+				-0.5
2,796,032	+				+0.9
2,796,032	+				-0.3
2,796,032	+				-0.3
2,796,032	+				+0.1
2,796,032	+				-0.9
2,796,032	+				-0.2
2,796,037	-				-0.5
2,796,040	-				+2.2
2,796,040	-				-0.2
2,796,040	-				+0.1
2,796,040	-				+0.4
2,796,040	-				+0.5
2,796,040	-				-0.1
2,796,040	-				-0.5
2,796,040	-				+0.0
2,796,040	-				+0.1
2,796,091	-		MIT1002_02507	0.11	-0.2
2,796,133	+		MIT1002_02507	0.14	+0.3