Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02491

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,777,001	+		MIT1002_02490	0.24	+0.3
2,777,023	+		MIT1002_02490	0.26	-0.4
2,777,023	+		MIT1002_02490	0.26	-1.0
2,777,023	+		MIT1002_02490	0.26	-0.3
2,777,031	-		MIT1002_02490	0.26	-0.6
2,777,031	-		MIT1002_02490	0.26	+1.7
2,777,041	-		MIT1002_02490	0.27	-0.5
2,777,058	+		MIT1002_02490	0.29	-0.8
2,777,066	-		MIT1002_02490	0.29	-1.7
2,777,066	-		MIT1002_02490	0.29	+0.7
2,777,066	-		MIT1002_02490	0.29	-1.8
2,777,090	+		MIT1002_02490	0.32	-1.7
2,777,091	+		MIT1002_02490	0.32	-0.0
2,777,124	+		MIT1002_02490	0.35	+2.3
2,777,132	-		MIT1002_02490	0.35	+0.2
2,777,132	-		MIT1002_02490	0.35	-0.9
2,777,234	-		MIT1002_02490	0.45	+0.4
2,777,234	-		MIT1002_02490	0.45	-0.3
2,777,244	-		MIT1002_02490	0.46	+0.2
2,777,244	-		MIT1002_02490	0.46	-1.6
2,777,292	-		MIT1002_02490	0.50	+0.2
2,777,409	+		MIT1002_02490	0.60	-1.4
2,777,498	-		MIT1002_02490	0.68	+1.0
2,777,516	+		MIT1002_02490	0.70	-0.0
2,777,525	-		MIT1002_02490	0.71	+0.1
2,777,545	+		MIT1002_02490	0.73	-1.7
2,777,611	+		MIT1002_02490	0.79	+0.0
2,777,621	+		MIT1002_02490	0.80	-1.0
2,777,629	-		MIT1002_02490	0.80	-0.0
2,777,747	-				-1.1
2,777,752	-				-0.8
2,777,862	+				-0.6
2,777,884	-				-3.1
2,779,967	-				-2.0
2,780,020	+				-0.1
2,780,020	+				-0.6
2,780,158	-				-0.1
2,780,186	+				-0.6
2,780,194	-				-0.0
2,780,208	-				+0.1
2,780,240	+				-0.6
2,780,248	-				-0.7
2,780,394	+				+0.5
2,780,396	-				-0.7
2,780,448	-		MIT1002_02492	0.15	-0.2
2,780,448	-		MIT1002_02492	0.15	-1.1
2,780,448	-		MIT1002_02492	0.15	-0.7
2,780,541	+		MIT1002_02492	0.26	-0.8
2,780,615	+		MIT1002_02492	0.34	+0.2
2,780,615	+		MIT1002_02492	0.34	-0.3
2,780,652	-		MIT1002_02492	0.39	-0.1
2,780,686	-		MIT1002_02492	0.43	-0.1
2,780,707	-		MIT1002_02492	0.45	-1.7
2,780,709	+		MIT1002_02492	0.46	-0.1
2,780,717	-		MIT1002_02492	0.47	-0.1
2,780,739	-		MIT1002_02492	0.49	-0.4
2,780,742	-		MIT1002_02492	0.50	+0.5
2,780,746	+		MIT1002_02492	0.50	+0.7
2,780,831	-		MIT1002_02492	0.60	+0.9
2,780,831	-		MIT1002_02492	0.60	-0.8
2,780,923	+		MIT1002_02492	0.71	+1.2
2,780,966	+		MIT1002_02492	0.76	+0.1
2,780,966	+		MIT1002_02492	0.76	+0.3