Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02472

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,761,631	+		MIT1002_02469	0.87	-0.3
2,761,742	+				-0.5
2,761,742	+				+0.3
2,761,747	+				+0.9
2,761,759	-				+0.9
2,761,766	+				+0.0
2,761,766	+				-1.0
2,761,842	+		MIT1002_02470	0.13	-3.1
2,761,842	+		MIT1002_02470	0.13	-1.0
2,761,854	+		MIT1002_02470	0.16	+0.7
2,761,862	-		MIT1002_02470	0.18	+0.2
2,761,899	-		MIT1002_02470	0.26	-0.4
2,761,911	-		MIT1002_02470	0.28	-0.3
2,761,956	+		MIT1002_02470	0.38	-0.2
2,761,966	-		MIT1002_02470	0.41	+0.3
2,762,020	+		MIT1002_02470	0.53	+0.4
2,762,020	+		MIT1002_02470	0.53	+0.5
2,762,024	-		MIT1002_02470	0.54	+0.2
2,762,028	-		MIT1002_02470	0.54	+0.6
2,762,028	-		MIT1002_02470	0.54	-0.7
2,762,028	-		MIT1002_02470	0.54	+1.2
2,762,028	-		MIT1002_02470	0.54	-0.5
2,762,028	-		MIT1002_02470	0.54	-0.7
2,762,053	+		MIT1002_02470	0.60	-0.1
2,762,053	+		MIT1002_02470	0.60	-0.5
2,762,053	+		MIT1002_02470	0.60	+0.1
2,762,061	-		MIT1002_02470	0.62	-0.7
2,762,078	+		MIT1002_02470	0.66	-2.8
2,762,110	+		MIT1002_02470	0.73	+0.3
2,762,110	+		MIT1002_02470	0.73	-1.3
2,762,118	-		MIT1002_02470	0.74	-2.0
2,762,118	-		MIT1002_02470	0.74	-1.1
2,762,120	-		MIT1002_02470	0.75	+0.8
2,762,154	-		MIT1002_02470	0.82	-0.4
2,762,287	+		MIT1002_02471	0.19	-2.4
2,762,398	-		MIT1002_02471	0.81	+0.6
2,762,409	+		MIT1002_02471	0.87	-0.2
2,762,409	+		MIT1002_02471	0.87	-0.0
2,762,455	-				-1.2
2,762,521	-				-0.1
2,762,544	-				-0.3
2,762,575	-		MIT1002_02472	0.10	-0.3
2,762,663	+		MIT1002_02472	0.21	+0.2
2,762,672	-		MIT1002_02472	0.22	+2.5
2,762,672	-		MIT1002_02472	0.22	+0.9
2,762,672	-		MIT1002_02472	0.22	-0.4
2,762,697	-		MIT1002_02472	0.25	-0.7
2,762,782	-		MIT1002_02472	0.35	-1.0
2,762,813	+		MIT1002_02472	0.38	-1.1
2,762,823	-		MIT1002_02472	0.39	+0.5
2,762,841	+		MIT1002_02472	0.42	+0.3
2,762,927	-		MIT1002_02472	0.52	-0.2
2,762,928	-		MIT1002_02472	0.52	+0.7
2,762,930	+		MIT1002_02472	0.52	+0.7
2,762,930	+		MIT1002_02472	0.52	+1.1
2,762,930	+		MIT1002_02472	0.52	+0.6
2,762,938	-		MIT1002_02472	0.53	+0.7
2,762,938	-		MIT1002_02472	0.53	+0.6
2,762,999	+		MIT1002_02472	0.60	-0.1
2,762,999	+		MIT1002_02472	0.60	+0.0
2,763,007	-		MIT1002_02472	0.61	-0.4
2,763,007	-		MIT1002_02472	0.61	-1.6
2,763,007	-		MIT1002_02472	0.61	+0.4
2,763,007	-		MIT1002_02472	0.61	+0.4
2,763,009	+		MIT1002_02472	0.61	-1.4
2,763,009	+		MIT1002_02472	0.61	+0.4
2,763,009	+		MIT1002_02472	0.61	+0.4
2,763,009	+		MIT1002_02472	0.61	+0.5
2,763,009	+		MIT1002_02472	0.61	-0.4
2,763,017	-		MIT1002_02472	0.62	+0.4
2,763,017	-		MIT1002_02472	0.62	+0.2
2,763,017	-		MIT1002_02472	0.62	+0.0
2,763,017	-		MIT1002_02472	0.62	+0.0
2,763,017	-		MIT1002_02472	0.62	-1.3
2,763,022	-		MIT1002_02472	0.63	+0.4
2,763,056	+		MIT1002_02472	0.67	-0.1
2,763,057	+		MIT1002_02472	0.67	-1.1
2,763,092	+		MIT1002_02472	0.71	-1.0
2,763,129	+		MIT1002_02472	0.76	+1.5
2,763,129	+		MIT1002_02472	0.76	+0.7
2,763,137	-		MIT1002_02472	0.77	-1.8
2,763,147	-		MIT1002_02472	0.78	+0.3
2,763,147	-		MIT1002_02472	0.78	-0.1
2,763,223	-		MIT1002_02472	0.87	+1.1
2,763,337	-				+1.0
2,763,429	+				+0.1
2,763,429	+				+0.5
2,763,439	+				+0.5
2,763,493	-		MIT1002_02473	0.13	+0.6
2,763,499	+		MIT1002_02473	0.14	+0.1
2,763,499	+		MIT1002_02473	0.14	+0.4
2,763,507	-		MIT1002_02473	0.16	-0.7
2,763,507	-		MIT1002_02473	0.16	+0.8
2,763,507	-		MIT1002_02473	0.16	-0.1
2,763,507	-		MIT1002_02473	0.16	+0.3
2,763,507	-		MIT1002_02473	0.16	+1.0
2,763,507	-		MIT1002_02473	0.16	-0.4
2,763,507	-		MIT1002_02473	0.16	+0.2
2,763,507	-		MIT1002_02473	0.16	+0.1
2,763,521	+		MIT1002_02473	0.18	+0.3
2,763,529	-		MIT1002_02473	0.19	-0.3
2,763,624	+		MIT1002_02473	0.36	-0.7
2,763,630	-		MIT1002_02473	0.37	-0.6
2,763,632	-		MIT1002_02473	0.37	+1.2
2,763,660	+		MIT1002_02473	0.42	-0.8
2,763,668	-		MIT1002_02473	0.43	+0.0
2,763,668	-		MIT1002_02473	0.43	-0.3
2,763,700	-		MIT1002_02473	0.48	-1.8
2,763,740	+		MIT1002_02473	0.55	+0.2
2,763,850	+		MIT1002_02473	0.74	+0.3
2,763,860	-		MIT1002_02473	0.75	-0.3
2,763,888	-		MIT1002_02473	0.80	-0.6
2,764,074	+				-0.0
2,764,082	-				+0.5
2,764,082	-				-0.4
2,764,083	+				+0.9
2,764,162	-				-0.5
2,764,264	-				+0.0
2,764,264	-				+0.7