Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02449

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,732,603	-		MIT1002_02448	0.36	+0.9
2,732,607	+		MIT1002_02448	0.37	+1.5
2,732,609	-		MIT1002_02448	0.37	-0.7
2,732,616	-		MIT1002_02448	0.37	+0.7
2,732,656	+		MIT1002_02448	0.40	+2.1
2,732,839	-		MIT1002_02448	0.52	+0.1
2,732,859	+		MIT1002_02448	0.54	-2.2
2,732,859	+		MIT1002_02448	0.54	-0.5
2,732,859	+		MIT1002_02448	0.54	-0.3
2,732,862	-		MIT1002_02448	0.54	-0.6
2,732,867	-		MIT1002_02448	0.54	-1.7
2,732,867	-		MIT1002_02448	0.54	-0.8
2,732,936	+		MIT1002_02448	0.59	-0.6
2,732,936	-		MIT1002_02448	0.59	-0.3
2,732,944	-		MIT1002_02448	0.60	+0.7
2,732,944	-		MIT1002_02448	0.60	+0.0
2,733,033	-		MIT1002_02448	0.66	-0.3
2,733,034	+		MIT1002_02448	0.66	-1.2
2,733,035	-		MIT1002_02448	0.66	+0.0
2,733,084	-		MIT1002_02448	0.69	-0.2
2,733,086	+		MIT1002_02448	0.69	+0.3
2,733,104	-		MIT1002_02448	0.70	-0.2
2,733,143	+		MIT1002_02448	0.73	-0.5
2,733,151	-		MIT1002_02448	0.74	-0.7
2,733,156	-		MIT1002_02448	0.74	+0.6
2,733,170	+		MIT1002_02448	0.75	-1.3
2,733,170	+		MIT1002_02448	0.75	+0.2
2,733,178	-		MIT1002_02448	0.75	+0.8
2,733,178	-		MIT1002_02448	0.75	-0.4
2,733,178	-		MIT1002_02448	0.75	+0.2
2,733,307	-		MIT1002_02448	0.84	-1.1
2,733,321	-		MIT1002_02448	0.85	+0.7
2,733,357	-		MIT1002_02448	0.88	+0.6
2,733,390	+		MIT1002_02448	0.90	-0.1
2,733,390	+		MIT1002_02448	0.90	+0.5
2,733,398	-				+2.3
2,733,405	-				-0.5
2,733,523	-				+0.4
2,733,539	-				-0.1
2,733,579	-				-0.0
2,733,659	-				+0.2
2,733,659	-				-0.8
2,733,677	-		MIT1002_02449	0.10	-0.4
2,733,775	-		MIT1002_02449	0.19	-0.4
2,733,785	-		MIT1002_02449	0.20	+1.4
2,734,044	-		MIT1002_02449	0.41	+2.1
2,734,126	-		MIT1002_02449	0.48	-0.5
2,734,138	-		MIT1002_02449	0.49	+1.7
2,734,140	-		MIT1002_02449	0.49	+1.7
2,734,264	-		MIT1002_02449	0.60	+0.5
2,734,290	+		MIT1002_02449	0.62	-0.8
2,734,298	-		MIT1002_02449	0.63	+0.9
2,734,322	-		MIT1002_02449	0.65	+0.3
2,734,322	-		MIT1002_02449	0.65	-0.6
2,734,349	+		MIT1002_02449	0.67	-0.0
2,734,357	-		MIT1002_02449	0.68	-0.1
2,734,387	+		MIT1002_02449	0.70	+0.2
2,734,397	+		MIT1002_02449	0.71	-0.2
2,734,448	+		MIT1002_02449	0.75	+1.1
2,734,448	+		MIT1002_02449	0.75	-0.0
2,734,448	+		MIT1002_02449	0.75	+0.6
2,734,448	+		MIT1002_02449	0.75	-0.7
2,734,448	+		MIT1002_02449	0.75	+0.2
2,734,448	+		MIT1002_02449	0.75	+0.8
2,734,448	+		MIT1002_02449	0.75	-0.6
2,734,456	-		MIT1002_02449	0.76	-0.4
2,734,456	-		MIT1002_02449	0.76	-0.3
2,734,456	-		MIT1002_02449	0.76	+0.4
2,734,456	-		MIT1002_02449	0.76	+0.8
2,734,456	-		MIT1002_02449	0.76	+0.5
2,734,456	-		MIT1002_02449	0.76	-0.3
2,734,456	-		MIT1002_02449	0.76	-0.3
2,734,456	-		MIT1002_02449	0.76	+0.3
2,734,456	-		MIT1002_02449	0.76	+0.1
2,734,481	+		MIT1002_02449	0.78	+0.1
2,734,502	-		MIT1002_02449	0.80	+0.4
2,734,511	+		MIT1002_02449	0.81	+3.0
2,734,526	+		MIT1002_02449	0.82	-0.8
2,734,534	-		MIT1002_02449	0.82	+0.5
2,734,534	-		MIT1002_02449	0.82	-0.2
2,734,534	-		MIT1002_02449	0.82	+0.5
2,734,553	-		MIT1002_02449	0.84	+1.1
2,734,600	-		MIT1002_02449	0.88	+1.1
2,734,606	-		MIT1002_02449	0.88	-0.2
2,734,616	+		MIT1002_02449	0.89	-0.3
2,734,616	+		MIT1002_02449	0.89	-0.5
2,734,616	+		MIT1002_02449	0.89	+1.3
2,734,624	-				-2.1
2,734,624	-				-1.8
2,734,636	-				-2.3
2,734,732	+				-0.6
2,734,815	-				+1.9
2,734,823	+				-0.4
2,734,823	+				+0.2
2,734,823	+				-1.4
2,734,831	-				+0.3
2,734,845	-				+0.7
2,734,855	+				+0.3
2,734,855	+				-0.8
2,734,863	-				+0.3
2,734,871	+				-0.0
2,734,886	+				-0.7
2,734,894	-				+0.4
2,734,899	+				-1.7
2,734,966	-				-0.8
2,735,027	+				+0.2
2,735,137	-		MIT1002_02450	0.16	-0.6
2,735,191	+		MIT1002_02450	0.19	+0.3
2,735,213	+		MIT1002_02450	0.21	-0.5
2,735,221	-		MIT1002_02450	0.21	-0.1
2,735,231	-		MIT1002_02450	0.22	-0.9
2,735,286	+		MIT1002_02450	0.25	-0.4
2,735,291	+		MIT1002_02450	0.26	+0.7
2,735,291	+		MIT1002_02450	0.26	+0.2
2,735,299	-		MIT1002_02450	0.26	+1.0
2,735,391	+		MIT1002_02450	0.32	-0.6
2,735,399	-		MIT1002_02450	0.33	+0.5
2,735,546	+		MIT1002_02450	0.42	+0.7
2,735,596	+		MIT1002_02450	0.45	+0.5
2,735,604	-		MIT1002_02450	0.46	-0.2
2,735,645	-		MIT1002_02450	0.48	+0.4
2,735,658	+		MIT1002_02450	0.49	-1.1
2,735,681	+		MIT1002_02450	0.51	-0.3
2,735,681	+		MIT1002_02450	0.51	-2.7
2,735,681	-		MIT1002_02450	0.51	-0.3
2,735,689	-		MIT1002_02450	0.51	+0.1
2,735,704	-		MIT1002_02450	0.52	-0.4
2,735,706	+		MIT1002_02450	0.52	-1.6
2,735,714	-		MIT1002_02450	0.53	+0.4
2,735,722	-		MIT1002_02450	0.53	+0.0