Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02341

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,605,728	+		MIT1002_02339	0.72	-0.9
2,605,728	+		MIT1002_02339	0.72	-0.5
2,605,728	+		MIT1002_02339	0.72	+1.5
2,605,728	+		MIT1002_02339	0.72	+0.7
2,605,728	+		MIT1002_02339	0.72	-1.1
2,605,736	-		MIT1002_02339	0.75	-2.3
2,605,736	-		MIT1002_02339	0.75	-3.0
2,605,736	-		MIT1002_02339	0.75	-1.5
2,605,736	-		MIT1002_02339	0.75	-2.1
2,605,738	+		MIT1002_02339	0.76	+0.4
2,605,738	+		MIT1002_02339	0.76	-1.2
2,605,738	+		MIT1002_02339	0.76	-0.1
2,605,870	+				-0.1
2,605,879	-				+0.1
2,605,880	+				-0.4
2,605,880	+				+0.9
2,605,882	+				-0.2
2,605,888	-				+0.2
2,605,929	+				-0.0
2,605,947	+				-0.4
2,605,991	-		MIT1002_02340	0.15	-0.0
2,606,033	-		MIT1002_02340	0.21	-0.3
2,606,043	-		MIT1002_02340	0.23	+0.6
2,606,075	+		MIT1002_02340	0.28	-1.0
2,606,083	-		MIT1002_02340	0.29	+0.5
2,606,083	-		MIT1002_02340	0.29	+0.3
2,606,102	-		MIT1002_02340	0.32	+1.0
2,606,117	+		MIT1002_02340	0.34	-0.2
2,606,162	+		MIT1002_02340	0.41	-0.3
2,606,179	+		MIT1002_02340	0.43	-0.7
2,606,179	+		MIT1002_02340	0.43	+1.4
2,606,182	-		MIT1002_02340	0.44	+0.3
2,606,188	+		MIT1002_02340	0.45	+0.0
2,606,191	+		MIT1002_02340	0.45	+0.4
2,606,194	-		MIT1002_02340	0.46	+0.3
2,606,198	-		MIT1002_02340	0.46	+1.0
2,606,285	+		MIT1002_02340	0.60	-0.4
2,606,293	-		MIT1002_02340	0.61	+0.1
2,606,304	+		MIT1002_02340	0.62	+0.1
2,606,308	+		MIT1002_02340	0.63	-0.7
2,606,308	+		MIT1002_02340	0.63	-1.0
2,606,308	+		MIT1002_02340	0.63	+0.2
2,606,308	+		MIT1002_02340	0.63	-1.0
2,606,308	+		MIT1002_02340	0.63	+0.4
2,606,308	+		MIT1002_02340	0.63	-0.7
2,606,308	+		MIT1002_02340	0.63	+0.7
2,606,308	+		MIT1002_02340	0.63	-0.5
2,606,308	+		MIT1002_02340	0.63	+0.0
2,606,308	+		MIT1002_02340	0.63	-1.1
2,606,308	+		MIT1002_02340	0.63	-0.9
2,606,315	-		MIT1002_02340	0.64	-2.4
2,606,316	-		MIT1002_02340	0.64	-1.3
2,606,316	-		MIT1002_02340	0.64	-1.1
2,606,316	-		MIT1002_02340	0.64	+0.4
2,606,316	-		MIT1002_02340	0.64	-0.0
2,606,316	-		MIT1002_02340	0.64	-0.0
2,606,316	-		MIT1002_02340	0.64	+0.1
2,606,362	-		MIT1002_02340	0.71	+0.8
2,606,397	-		MIT1002_02340	0.77	-1.9
2,606,403	+		MIT1002_02340	0.77	+1.1
2,606,403	+		MIT1002_02340	0.77	-0.9
2,606,411	-		MIT1002_02340	0.79	-0.3
2,606,416	-		MIT1002_02340	0.79	+0.3
2,606,465	+		MIT1002_02340	0.87	+0.1
2,606,473	-		MIT1002_02340	0.88	+0.3
2,606,540	+				+0.7
2,606,590	+				-0.7
2,606,606	+				+1.4
2,606,606	+				+0.1
2,606,636	+				+0.3
2,606,644	-				+0.3
2,606,686	-				-0.1
2,606,712	+				+0.8
2,606,720	-				+0.1
2,606,934	-		MIT1002_02341	0.15	-0.3
2,607,003	-		MIT1002_02341	0.18	+1.0
2,607,019	+		MIT1002_02341	0.19	+0.1
2,607,191	+		MIT1002_02341	0.26	-0.1
2,607,213	-		MIT1002_02341	0.26	+0.4
2,607,312	+		MIT1002_02341	0.30	+0.5
2,607,312	+		MIT1002_02341	0.30	+0.7
2,607,312	+		MIT1002_02341	0.30	-0.9
2,607,320	-		MIT1002_02341	0.31	+0.2
2,607,474	+		MIT1002_02341	0.37	-0.1
2,607,482	-		MIT1002_02341	0.37	-3.6
2,607,513	-		MIT1002_02341	0.39	-0.2
2,607,513	-		MIT1002_02341	0.39	+1.3
2,607,524	-		MIT1002_02341	0.39	+0.8
2,607,582	-		MIT1002_02341	0.42	-0.2
2,607,641	+		MIT1002_02341	0.44	+0.6
2,607,641	+		MIT1002_02341	0.44	+0.5
2,607,641	+		MIT1002_02341	0.44	+0.1
2,607,649	-		MIT1002_02341	0.44	-0.3
2,607,649	-		MIT1002_02341	0.44	+1.2
2,607,649	-		MIT1002_02341	0.44	+0.1
2,607,678	+		MIT1002_02341	0.45	-0.7
2,607,685	+		MIT1002_02341	0.46	+0.3
2,607,685	+		MIT1002_02341	0.46	-0.9
2,607,685	+		MIT1002_02341	0.46	+0.9
2,607,693	-		MIT1002_02341	0.46	-1.5
2,607,693	-		MIT1002_02341	0.46	-0.3
2,607,693	-		MIT1002_02341	0.46	-0.7
2,607,693	-		MIT1002_02341	0.46	-0.7
2,607,693	-		MIT1002_02341	0.46	+0.7
2,607,693	-		MIT1002_02341	0.46	-0.1
2,607,693	-		MIT1002_02341	0.46	+1.7
2,607,706	+		MIT1002_02341	0.47	-0.3
2,607,706	+		MIT1002_02341	0.47	-0.1
2,607,706	-		MIT1002_02341	0.47	-0.3
2,607,713	+		MIT1002_02341	0.47	+0.4
2,607,722	+		MIT1002_02341	0.47	-0.3
2,607,732	+		MIT1002_02341	0.48	+1.2
2,607,732	+		MIT1002_02341	0.48	-1.5
2,607,750	-		MIT1002_02341	0.48	+0.9
2,607,770	-		MIT1002_02341	0.49	-0.2
2,607,784	-		MIT1002_02341	0.50	-1.0
2,607,794	+		MIT1002_02341	0.50	-0.6
2,607,799	+		MIT1002_02341	0.50	+0.3
2,607,799	+		MIT1002_02341	0.50	+0.6
2,607,804	+		MIT1002_02341	0.51	-0.4
2,607,807	-		MIT1002_02341	0.51	+1.0
2,607,812	-		MIT1002_02341	0.51	+0.9
2,607,902	+		MIT1002_02341	0.55	-1.0
2,607,902	+		MIT1002_02341	0.55	-1.4
2,607,902	+		MIT1002_02341	0.55	-0.7
2,607,910	-		MIT1002_02341	0.55	+1.5
2,607,910	-		MIT1002_02341	0.55	+0.7
2,607,910	-		MIT1002_02341	0.55	+1.0
2,607,910	-		MIT1002_02341	0.55	+0.2
2,607,910	-		MIT1002_02341	0.55	-0.6
2,607,910	-		MIT1002_02341	0.55	-1.2
2,607,938	-		MIT1002_02341	0.56	-0.5
2,608,074	-		MIT1002_02341	0.62	-0.3
2,608,107	-		MIT1002_02341	0.63	-0.1
2,608,118	-		MIT1002_02341	0.63	-0.2
2,608,244	+		MIT1002_02341	0.69	-0.2
2,608,279	-		MIT1002_02341	0.70	-1.2
2,608,365	-		MIT1002_02341	0.73	-1.0
2,608,409	+		MIT1002_02341	0.75	-1.3
2,608,530	+		MIT1002_02341	0.80	-0.2
2,608,531	-		MIT1002_02341	0.80	+0.7
2,608,563	+		MIT1002_02341	0.82	+0.3
2,608,571	-		MIT1002_02341	0.82	+1.5
2,608,594	+		MIT1002_02341	0.83	-1.7
2,608,627	+		MIT1002_02341	0.84	+0.3
2,608,627	+		MIT1002_02341	0.84	-0.5
2,608,627	+		MIT1002_02341	0.84	+1.4
2,608,635	-		MIT1002_02341	0.85	+0.0
2,608,635	-		MIT1002_02341	0.85	-0.7
2,608,719	-		MIT1002_02341	0.88	-0.3
2,608,725	+		MIT1002_02341	0.88	+1.9
2,608,726	+		MIT1002_02341	0.88	+0.2
2,608,739	-		MIT1002_02341	0.89	-0.0
2,608,816	-				-0.2
2,608,879	+				-0.1
2,608,879	+				-0.4
2,608,892	-				-0.3
2,608,897	-				-1.5
2,609,048	+				-1.6
2,609,048	+				-0.6
2,609,048	+				-0.5
2,609,048	+				-0.6
2,609,056	-				+1.0
2,609,056	-				-0.7
2,609,056	-				+0.7
2,609,062	+				+0.7
2,609,070	-				+0.6
2,609,109	+				+0.7
2,609,122	-				-0.5
2,609,209	+				-0.2
2,609,217	-				-0.2
2,609,288	+				+0.0
2,609,378	+				+1.1
2,609,378	+				+0.0
2,609,378	+				+0.1
2,609,378	+				-0.5
2,609,378	+				+0.2
2,609,378	+				-0.6
2,609,386	-				+0.9
2,609,386	-				-0.8
2,609,386	-				-0.6
2,609,386	-				-0.5
2,609,386	-				-0.5
2,609,386	-				+0.2
2,609,386	-				-1.1
2,609,386	-				+1.0
2,609,432	+				-0.8
2,609,442	+				-0.0
2,609,449	+				-0.4
2,609,565	-		MIT1002_02342	0.15	+0.2
2,609,576	+		MIT1002_02342	0.15	+0.6
2,609,698	+		MIT1002_02342	0.23	+1.5
2,609,699	-		MIT1002_02342	0.24	-0.2
2,609,709	+		MIT1002_02342	0.24	-0.3
2,609,717	-		MIT1002_02342	0.25	+0.6
2,609,778	+		MIT1002_02342	0.29	-0.1
2,609,786	-		MIT1002_02342	0.29	-0.7
2,609,786	-		MIT1002_02342	0.29	+2.0
2,609,790	+		MIT1002_02342	0.30	+1.4
2,609,824	+		MIT1002_02342	0.32	-0.2
2,609,984	+		MIT1002_02342	0.43	+1.0
2,609,992	-		MIT1002_02342	0.43	+0.1
2,609,992	-		MIT1002_02342	0.43	+0.0
2,609,992	-		MIT1002_02342	0.43	-0.4
2,609,992	-		MIT1002_02342	0.43	+2.2
2,610,010	-		MIT1002_02342	0.44	+0.5