Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02305

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,571,085	-				-0.2
2,571,270	+				+1.0
2,571,270	+				-1.2
2,571,270	+				+0.7
2,571,278	-				-0.1
2,571,278	-				+0.7
2,571,326	-				-0.0
2,571,346	-				-0.3
2,571,370	-		MIT1002_02304	0.14	+0.2
2,571,412	+		MIT1002_02304	0.27	+0.9
2,571,436	-		MIT1002_02304	0.34	-0.0
2,571,453	-		MIT1002_02304	0.39	+0.6
2,571,453	-		MIT1002_02304	0.39	-1.6
2,571,492	+		MIT1002_02304	0.50	+1.4
2,571,554	+		MIT1002_02304	0.68	+0.1
2,571,562	-		MIT1002_02304	0.70	-0.1
2,571,562	-		MIT1002_02304	0.70	-0.8
2,571,631	-				+0.1
2,571,731	+				-0.7
2,571,739	-				-0.1
2,571,739	-				-1.6
2,571,744	-				-0.2
2,571,793	-				-1.1
2,572,188	-		MIT1002_02305	0.13	-1.2
2,572,260	+		MIT1002_02305	0.22	-0.7
2,572,271	+		MIT1002_02305	0.24	+0.2
2,572,271	+		MIT1002_02305	0.24	-0.5
2,572,271	+		MIT1002_02305	0.24	-1.4
2,572,279	-		MIT1002_02305	0.25	+0.4
2,572,279	-		MIT1002_02305	0.25	-1.0
2,572,279	-		MIT1002_02305	0.25	-1.3
2,572,279	-		MIT1002_02305	0.25	-2.0
2,572,330	-		MIT1002_02305	0.31	-0.3
2,572,377	-		MIT1002_02305	0.37	-1.1
2,572,377	-		MIT1002_02305	0.37	-0.8
2,572,499	+		MIT1002_02305	0.52	-0.9
2,572,547	-		MIT1002_02305	0.58	+0.7
2,572,547	-		MIT1002_02305	0.58	-0.6
2,572,602	-		MIT1002_02305	0.65	-0.7
2,572,606	+		MIT1002_02305	0.66	-0.2
2,572,663	-		MIT1002_02305	0.73	-0.4
2,572,691	-		MIT1002_02305	0.77	+0.1
2,572,830	-				+0.1
2,572,904	+				+0.1
2,572,912	-				-0.3
2,572,926	+				+0.5
2,573,203	+				-2.9
2,573,204	-				-2.1
2,573,245	-				-5.3
2,573,395	-		MIT1002_02306	0.20	-2.1
2,573,410	-		MIT1002_02306	0.21	-3.3
2,573,422	-		MIT1002_02306	0.22	-2.1
2,573,538	+		MIT1002_02306	0.32	-3.1
2,573,668	-		MIT1002_02306	0.43	-3.9
2,573,718	-		MIT1002_02306	0.47	-1.3
2,573,750	+		MIT1002_02306	0.49	-0.9
2,573,808	+		MIT1002_02306	0.54	-2.3
2,573,876	-		MIT1002_02306	0.60	-3.3