Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02195

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02194 and MIT1002_02195 are separated by 549 nucleotidesMIT1002_02195 and MIT1002_02196 are separated by 122 nucleotides MIT1002_02194: MIT1002_02194 - 3-demethylubiquinone-9 3-methyltransferase, at 2,453,537 to 2,454,241 _02194 MIT1002_02195: MIT1002_02195 - Ribonucleoside-diphosphate reductase 1 subunit alpha, at 2,454,791 to 2,457,112 _02195 MIT1002_02196: MIT1002_02196 - Ribonucleoside-diphosphate reductase 1 subunit beta, at 2,457,235 to 2,458,365 _02196 Position (kb) 2454 2455 2456 2457 2458Strain fitness (log2 ratio) -2 -1 0 1at 2454.220 kb on + strandat 2454.225 kb on - strandat 2454.225 kb on - strandat 2454.228 kb on - strandat 2454.228 kb on - strandat 2457.165 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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2,454,220 + +0.2
2,454,225 - -0.2
2,454,225 - -1.7
2,454,228 - -0.5
2,454,228 - +0.6
2,457,165 + -2.1

Or see this region's nucleotide sequence