Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02191

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02189 and MIT1002_02190 are separated by 118 nucleotidesMIT1002_02190 and MIT1002_02191 are separated by 183 nucleotidesMIT1002_02191 and MIT1002_02192 are separated by 1 nucleotides MIT1002_02189: MIT1002_02189 - 30S ribosomal protein S1, at 2,445,360 to 2,447,030 _02189 MIT1002_02190: MIT1002_02190 - Cytidylate kinase, at 2,447,149 to 2,447,820 _02190 MIT1002_02191: MIT1002_02191 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,448,004 to 2,449,287 _02191 MIT1002_02192: MIT1002_02192 - Phosphoserine aminotransferase, at 2,449,289 to 2,450,374 _02192 Position (kb) 2448 2449 2450Strain fitness (log2 ratio) -2 -1 0 1at 2447.900 kb on - strandat 2447.918 kb on + strandat 2447.918 kb on + strandat 2447.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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2,447,900 - +1.7
2,447,918 + -2.0
2,447,918 + +1.4
2,447,918 + -0.3

Or see this region's nucleotide sequence