Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01991

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,225,267	+				+0.2
2,225,277	-				+0.4
2,225,291	+				+1.0
2,225,306	+				-0.2
2,225,374	+				+0.8
2,225,430	+		MIT1002_01990	0.13	-1.0
2,225,482	-		MIT1002_01990	0.19	+1.4
2,225,519	+		MIT1002_01990	0.24	+0.4
2,225,527	-		MIT1002_01990	0.25	-0.0
2,225,584	+		MIT1002_01990	0.32	-0.2
2,225,592	-		MIT1002_01990	0.32	-0.9
2,225,592	-		MIT1002_01990	0.32	+0.2
2,225,592	-		MIT1002_01990	0.32	+1.5
2,225,592	-		MIT1002_01990	0.32	-0.5
2,225,609	+		MIT1002_01990	0.35	+0.2
2,225,623	+		MIT1002_01990	0.36	-0.1
2,225,658	+		MIT1002_01990	0.40	-0.5
2,225,658	+		MIT1002_01990	0.40	+1.1
2,225,806	+		MIT1002_01990	0.58	-1.2
2,225,857	-		MIT1002_01990	0.64	+0.3
2,225,879	-		MIT1002_01990	0.67	+0.1
2,225,897	-		MIT1002_01990	0.69	-1.1
2,226,168	+				-0.6
2,226,178	+				+2.6
2,226,178	-				+0.3
2,226,254	-				+1.0
2,226,292	+				-0.2
2,226,292	+				+1.8
2,226,310	-				-0.1
2,226,360	+				+0.0
2,226,368	-		MIT1002_01991	0.11	-0.9
2,226,368	-		MIT1002_01991	0.11	-3.4
2,226,383	-		MIT1002_01991	0.12	+1.3
2,226,429	-		MIT1002_01991	0.17	-0.5
2,226,441	+		MIT1002_01991	0.18	-1.0
2,226,449	-		MIT1002_01991	0.19	-0.3
2,226,449	-		MIT1002_01991	0.19	-0.9
2,226,449	-		MIT1002_01991	0.19	+1.6
2,226,449	-		MIT1002_01991	0.19	+0.8
2,226,476	-		MIT1002_01991	0.21	-0.0
2,226,484	+		MIT1002_01991	0.22	-1.4
2,226,485	+		MIT1002_01991	0.22	+1.1
2,226,495	+		MIT1002_01991	0.23	-1.6
2,226,495	+		MIT1002_01991	0.23	+0.3
2,226,503	-		MIT1002_01991	0.24	-0.0
2,226,517	-		MIT1002_01991	0.25	+1.6
2,226,638	-		MIT1002_01991	0.37	+0.3
2,226,647	-		MIT1002_01991	0.38	+0.6
2,226,784	+		MIT1002_01991	0.52	-0.2
2,226,855	-		MIT1002_01991	0.59	+0.3
2,226,914	+		MIT1002_01991	0.65	+1.0
2,226,983	+		MIT1002_01991	0.72	-0.4
2,227,023	-		MIT1002_01991	0.76	+0.9
2,227,055	-		MIT1002_01991	0.79	+0.5
2,227,057	+		MIT1002_01991	0.79	-0.2
2,227,057	+		MIT1002_01991	0.79	-0.7
2,227,062	+		MIT1002_01991	0.80	+0.6
2,227,065	-		MIT1002_01991	0.80	+0.5
2,227,065	-		MIT1002_01991	0.80	-0.5
2,227,065	-		MIT1002_01991	0.80	-0.6
2,227,070	-		MIT1002_01991	0.80	-0.1
2,227,136	-		MIT1002_01991	0.87	-0.3
2,227,136	-		MIT1002_01991	0.87	-1.7
2,227,221	-				+1.6
2,227,264	-				+0.0
2,227,288	+				-0.8
2,227,288	+				+0.7
2,227,307	+				-0.6
2,227,315	-				+1.0
2,227,317	+				+0.6
2,227,330	-				-0.4
2,227,492	+				-0.0
2,227,492	+				+1.1
2,227,492	+				-1.0
2,227,500	-				-1.0
2,227,500	-				-0.9
2,227,500	-				-0.4
2,227,500	-				-0.6
2,227,500	-				-0.6
2,227,527	+				+1.2
2,227,527	+				+0.5
2,227,620	-		MIT1002_01992	0.21	-0.3
2,227,692	-		MIT1002_01992	0.30	+0.5
2,227,711	+		MIT1002_01992	0.32	+0.3
2,227,711	+		MIT1002_01992	0.32	-0.5
2,228,089	+		MIT1002_01992	0.77	-0.7
2,228,222	+				-0.1
2,228,230	+				+0.8