Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01871

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,082,063	+		MIT1002_01869	0.63	+0.8
2,082,063	+		MIT1002_01869	0.63	-1.2
2,082,110	+		MIT1002_01869	0.74	+0.4
2,082,334	-				-1.0
2,082,336	+				+0.7
2,082,362	+				-1.6
2,082,370	-				-1.5
2,082,370	-				+0.3
2,082,385	-				-0.2
2,082,385	-				-1.6
2,082,541	+				+1.1
2,082,549	-				+0.1
2,082,549	-				-0.1
2,082,552	-				-0.6
2,082,583	-				+0.3
2,082,587	+				-0.0
2,082,630	+				+2.3
2,082,638	-				-1.8
2,082,638	-				+0.2
2,082,727	-				+1.4
2,082,729	+				-3.7
2,082,729	+				-0.0
2,082,737	-				-2.6
2,082,737	-				-0.1
2,082,771	-				-0.8
2,082,816	+		MIT1002_01871	0.12	-1.4
2,082,868	+		MIT1002_01871	0.14	+0.5
2,082,868	+		MIT1002_01871	0.14	-1.1
2,082,868	+		MIT1002_01871	0.14	+1.1
2,082,868	+		MIT1002_01871	0.14	+0.1
2,082,868	+		MIT1002_01871	0.14	+0.7
2,082,876	-		MIT1002_01871	0.14	+0.6
2,082,885	+		MIT1002_01871	0.15	+0.1
2,082,895	+		MIT1002_01871	0.15	-0.4
2,082,900	+		MIT1002_01871	0.15	+0.4
2,082,905	+		MIT1002_01871	0.16	-0.5
2,082,962	-		MIT1002_01871	0.18	+0.2
2,083,089	-		MIT1002_01871	0.24	-1.4
2,083,304	-		MIT1002_01871	0.33	-2.2
2,083,310	-		MIT1002_01871	0.33	+0.3
2,083,380	+		MIT1002_01871	0.36	-0.0
2,083,425	+		MIT1002_01871	0.38	+1.0
2,083,425	+		MIT1002_01871	0.38	+0.7
2,083,425	+		MIT1002_01871	0.38	+0.6
2,083,425	+		MIT1002_01871	0.38	+0.1
2,083,433	-		MIT1002_01871	0.39	-0.4
2,083,456	-		MIT1002_01871	0.40	-0.2
2,083,456	-		MIT1002_01871	0.40	-0.8
2,083,492	+		MIT1002_01871	0.41	-0.6
2,083,520	+		MIT1002_01871	0.42	+1.6
2,083,624	+		MIT1002_01871	0.47	-1.1
2,083,627	-		MIT1002_01871	0.47	-3.3
2,083,713	-		MIT1002_01871	0.51	-0.6
2,083,715	+		MIT1002_01871	0.51	+0.3
2,083,753	+		MIT1002_01871	0.52	-0.2
2,083,780	-		MIT1002_01871	0.54	-0.7
2,083,866	-		MIT1002_01871	0.57	-0.7
2,083,875	-		MIT1002_01871	0.58	-1.6
2,083,927	+		MIT1002_01871	0.60	-2.0
2,083,965	+		MIT1002_01871	0.62	-0.8
2,084,043	-		MIT1002_01871	0.65	+0.6
2,084,049	+		MIT1002_01871	0.65	-0.7
2,084,120	+		MIT1002_01871	0.68	+2.0
2,084,120	+		MIT1002_01871	0.68	-0.2
2,084,128	-		MIT1002_01871	0.69	-0.9
2,084,128	-		MIT1002_01871	0.69	+0.4
2,084,163	-		MIT1002_01871	0.70	-0.6
2,084,170	+		MIT1002_01871	0.71	+1.1
2,084,202	+		MIT1002_01871	0.72	+0.3
2,084,267	+		MIT1002_01871	0.75	+1.4
2,084,319	+		MIT1002_01871	0.77	-1.2
2,084,333	-		MIT1002_01871	0.78	-0.5
2,084,333	-		MIT1002_01871	0.78	-1.2
2,084,552	-		MIT1002_01871	0.87	-0.4
2,084,611	+		MIT1002_01871	0.90	-0.2
2,084,619	-				-0.5
2,084,672	-				+1.0
2,084,762	+				-0.5
2,084,797	+				+0.0
2,084,797	+				-0.1
2,084,805	-				+0.3
2,084,907	-				+0.1
2,084,966	+				+0.1
2,085,107	-		MIT1002_01872	0.44	-0.3
2,085,129	+		MIT1002_01872	0.58	+0.2
2,085,172	+		MIT1002_01872	0.85	-0.6
2,085,172	+		MIT1002_01872	0.85	-1.1
2,085,172	+		MIT1002_01872	0.85	-0.6
2,085,172	+		MIT1002_01872	0.85	-0.7
2,085,172	+		MIT1002_01872	0.85	+1.5
2,085,172	+		MIT1002_01872	0.85	-1.8
2,085,172	+		MIT1002_01872	0.85	-0.0
2,085,172	+		MIT1002_01872	0.85	-0.0
2,085,172	+		MIT1002_01872	0.85	+0.2
2,085,172	+		MIT1002_01872	0.85	-1.0
2,085,172	+		MIT1002_01872	0.85	-0.2
2,085,172	+		MIT1002_01872	0.85	+0.4
2,085,180	-				-0.0
2,085,180	-				-0.6
2,085,180	-				-0.1
2,085,180	-				-0.2