Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01835

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
2,044,027	+		MIT1002_01834	0.65	+0.0
2,044,082	-		MIT1002_01834	0.68	-0.3
2,044,090	-		MIT1002_01834	0.68	-2.6
2,044,116	+		MIT1002_01834	0.69	+0.1
2,044,177	-		MIT1002_01834	0.72	-0.7
2,044,182	-		MIT1002_01834	0.72	-0.9
2,044,220	+		MIT1002_01834	0.74	-0.8
2,044,257	-		MIT1002_01834	0.75	-2.3
2,044,397	+		MIT1002_01834	0.81	+0.0
2,044,418	-		MIT1002_01834	0.82	+1.1
2,044,449	+		MIT1002_01834	0.84	-0.3
2,044,581	+		MIT1002_01834	0.90	-2.7
2,044,590	+		MIT1002_01834	0.90	-1.5
2,044,605	+				-0.2
2,044,624	+				+0.1
2,044,657	-				-1.8
2,044,681	+				+0.0
2,044,695	-				-0.8
2,044,734	+				-0.3
2,044,857	-				-0.2
2,044,924	-				-1.1
2,045,265	-				-3.3
2,045,403	-		MIT1002_01836	0.15	+0.2
2,045,425	+		MIT1002_01836	0.19	-0.4
2,045,433	-		MIT1002_01836	0.20	-0.0
2,045,458	+		MIT1002_01836	0.23	-0.2
2,045,466	-		MIT1002_01836	0.24	-0.4
2,045,486	+		MIT1002_01836	0.27	-0.1
2,045,486	+		MIT1002_01836	0.27	-0.5
2,045,492	-		MIT1002_01836	0.28	+0.7
2,045,597	-		MIT1002_01836	0.42	-2.1
2,045,689	+		MIT1002_01836	0.55	+0.3
2,045,699	-		MIT1002_01836	0.56	+0.2
2,045,766	+		MIT1002_01836	0.66	-0.6
2,045,789	+		MIT1002_01836	0.69	-0.1
2,045,797	+		MIT1002_01836	0.70	+0.4
2,045,799	+		MIT1002_01836	0.70	+0.8
2,045,826	+		MIT1002_01836	0.74	-0.2
2,046,003	-				+0.7
2,046,003	-				-0.2
2,046,039	+				-1.5
2,046,039	+				+0.2
2,046,039	+				+0.3
2,046,202	-		MIT1002_01837	0.25	+1.0
2,046,204	+		MIT1002_01837	0.25	+0.9