Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01779

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
1,974,998	+		MIT1002_01778	0.51	-1.1
1,974,998	+		MIT1002_01778	0.51	-2.4
1,975,109	-		MIT1002_01778	0.58	+0.5
1,975,145	+		MIT1002_01778	0.60	+0.1
1,975,146	+		MIT1002_01778	0.60	+0.2
1,975,146	+		MIT1002_01778	0.60	+0.4
1,975,146	+		MIT1002_01778	0.60	+0.4
1,975,146	+		MIT1002_01778	0.60	-0.8
1,975,154	-		MIT1002_01778	0.61	+0.3
1,975,154	-		MIT1002_01778	0.61	-1.8
1,975,160	+		MIT1002_01778	0.61	-1.2
1,975,160	+		MIT1002_01778	0.61	-0.1
1,975,162	-		MIT1002_01778	0.61	-0.7
1,975,201	+		MIT1002_01778	0.64	-0.5
1,975,209	-		MIT1002_01778	0.64	-0.8
1,975,249	+		MIT1002_01778	0.67	+0.0
1,975,296	-		MIT1002_01778	0.70	+0.7
1,975,363	+		MIT1002_01778	0.74	+0.3
1,975,429	+		MIT1002_01778	0.79	-0.2
1,975,437	+		MIT1002_01778	0.79	+1.1
1,975,464	+		MIT1002_01778	0.81	+1.1
1,975,528	+		MIT1002_01778	0.85	-0.0
1,975,607	+				+0.5
1,975,610	-				-0.3
1,975,615	-				+0.9
1,975,626	+				-0.2
1,975,626	+				-0.4
1,975,626	+				+0.1
1,975,634	-				-2.0
1,975,649	-				-0.9
1,975,666	-				-0.3
1,975,691	-				+0.3
1,975,715	+				-0.3
1,975,757	+				+0.0
1,975,801	+				-0.9
1,975,809	-				+0.7
1,975,811	+				-0.8
1,975,862	+				+1.0
1,975,877	-				-0.3
1,975,877	-				-0.9
1,975,925	+				+1.5
1,975,979	+				-1.9
1,975,987	-		MIT1002_01779	0.11	+0.6
1,976,008	-		MIT1002_01779	0.24	+0.8
1,976,094	+		MIT1002_01779	0.75	-0.4
1,976,094	+		MIT1002_01779	0.75	-0.7
1,976,100	-		MIT1002_01779	0.79	+0.7
1,976,132	+				+0.3
1,976,188	+				+0.3
1,976,193	+				-0.1
1,976,196	-				-0.2
1,976,212	+				-1.5
1,976,220	-				-0.6
1,976,327	+		MIT1002_01780	0.21	+1.5
1,976,335	-		MIT1002_01780	0.22	-2.3
1,976,375	+		MIT1002_01780	0.28	-0.4
1,976,375	+		MIT1002_01780	0.28	+1.2
1,976,383	-		MIT1002_01780	0.29	-0.2
1,976,383	-		MIT1002_01780	0.29	-0.8
1,976,383	-		MIT1002_01780	0.29	-1.6
1,976,479	+		MIT1002_01780	0.43	+0.6
1,976,479	+		MIT1002_01780	0.43	+0.0
1,976,583	+		MIT1002_01780	0.59	-0.6
1,976,608	-		MIT1002_01780	0.62	+0.9
1,976,620	+		MIT1002_01780	0.64	-0.3
1,976,695	-		MIT1002_01780	0.75	-1.3
1,976,695	-		MIT1002_01780	0.75	+0.5
1,976,709	+		MIT1002_01780	0.77	-0.2
1,976,811	+				-0.9
1,976,819	-				+0.8
1,976,920	+				+1.0
1,976,920	+				-0.2
1,976,963	-				+2.3
1,976,998	+				+0.4
1,976,998	+				+0.6
1,976,998	+				+0.3